Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2818173..2818444 | Replicon | chromosome |
| Accession | NZ_CP032261 | ||
| Organism | Escherichia coli strain AR_0067 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2818211..2818314 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2818173..2818444 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM446_RS16215 | 2815330..2816769 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM446_RS16220 | 2816887..2817123 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM446_RS16225 | 2817228..2817419 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AM446_RS16230 | 2817420..2818076 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 2818173..2818444 | + | 272 | - | - | Antitoxin |
| - | 2818211..2818314 | - | 104 | - | - | Toxin |
| AM446_RS16235 | 2818472..2818813 | - | 342 | WP_001520705.1 | YebY family protein | - |
| AM446_RS16240 | 2818826..2819698 | - | 873 | WP_119163958.1 | copper homeostasis membrane protein CopD | - |
| AM446_RS16245 | 2819702..2820076 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| AM446_RS16250 | 2820215..2820445 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM446_RS16255 | 2820547..2821203 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| AM446_RS16260 | 2821227..2821889 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T111514 NZ_CP032261:c2818314-2818211 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT111514 NZ_CP032261:2818173-2818444 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
