Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2035570..2035841 | Replicon | chromosome |
| Accession | NZ_CP032237 | ||
| Organism | Escherichia coli strain ECCWS199 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2035700..2035803 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2035570..2035841 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3W53_RS10280 | 2032125..2032787 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| D3W53_RS10285 | 2032811..2033467 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| D3W53_RS10290 | 2033569..2033799 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D3W53_RS10295 | 2033938..2034312 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| D3W53_RS10300 | 2034316..2035188 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| D3W53_RS10305 | 2035201..2035542 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2035570..2035841 | - | 272 | - | - | Antitoxin |
| - | 2035700..2035803 | + | 104 | - | - | Toxin |
| D3W53_RS10310 | 2035938..2036594 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| D3W53_RS10315 | 2036595..2036786 | - | 192 | WP_001338167.1 | YebW family protein | - |
| D3W53_RS10320 | 2036891..2037127 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| D3W53_RS10325 | 2037245..2038684 | - | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T111433 NZ_CP032237:2035700-2035803 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT111433 NZ_CP032237:c2035841-2035570 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
