Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1889858..1890003 | Replicon | chromosome |
| Accession | NZ_CP032222 | ||
| Organism | Klebsiella pneumoniae strain AR_0046 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1889865..1889967 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1889858..1890003 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM425_RS09420 | 1885389..1886822 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM425_RS09425 | 1886938..1887177 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM425_RS09430 | 1887275..1887466 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM425_RS09435 | 1887463..1888116 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| AM425_RS09440 | 1888273..1889241 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| AM425_RS29645 | 1889346..1889489 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 1889858..1890003 | + | 146 | - | - | Antitoxin |
| - | 1889865..1889967 | - | 103 | - | - | Toxin |
| AM425_RS09450 | 1890126..1890464 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM425_RS09455 | 1890481..1891350 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| AM425_RS09460 | 1891354..1891728 | - | 375 | WP_060577972.1 | CopC domain-containing protein YobA | - |
| AM425_RS09465 | 1891841..1892071 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM425_RS09470 | 1892150..1892809 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM425_RS09475 | 1892813..1894873 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111403 NZ_CP032222:c1889967-1889865 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT111403 NZ_CP032222:1889858-1890003 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
