Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3151914..3152182 | Replicon | chromosome |
| Accession | NZ_CP032201 | ||
| Organism | Escherichia coli strain AR_0086 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3152042..3152144 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3151914..3152182 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM465_RS16115 | 3148467..3149129 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM465_RS16120 | 3149153..3149809 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AM465_RS16125 | 3149911..3150141 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM465_RS16130 | 3150280..3150654 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM465_RS16135 | 3150658..3151530 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| AM465_RS16140 | 3151543..3151884 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3151914..3152182 | - | 269 | - | - | Antitoxin |
| - | 3152042..3152144 | + | 103 | - | - | Toxin |
| AM465_RS16145 | 3152279..3152935 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| AM465_RS16150 | 3152936..3153127 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AM465_RS16155 | 3153232..3153468 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM465_RS16160 | 3153585..3155024 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111327 NZ_CP032201:3152042-3152144 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT111327 NZ_CP032201:c3152182-3151914 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
