Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3805805..3805950 | Replicon | chromosome |
| Accession | NZ_CP032200 | ||
| Organism | Klebsiella pneumoniae strain AR_0097 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3805841..3805943 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3805805..3805950 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM476_RS21410 | 3800935..3802995 | + | 2061 | WP_047694778.1 | oligopeptidase B | - |
| AM476_RS21415 | 3802999..3803658 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM476_RS21420 | 3803737..3803967 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM476_RS21425 | 3804080..3804454 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| AM476_RS21430 | 3804458..3805327 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| AM476_RS21435 | 3805344..3805682 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3805805..3805950 | - | 146 | - | - | Antitoxin |
| - | 3805841..3805943 | + | 103 | - | - | Toxin |
| AM476_RS30010 | 3806318..3806461 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AM476_RS21445 | 3806566..3807534 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM476_RS21450 | 3807691..3808344 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| AM476_RS21455 | 3808341..3808532 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AM476_RS21460 | 3808630..3808869 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AM476_RS21465 | 3808985..3810418 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111306 NZ_CP032200:3805841-3805943 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT111306 NZ_CP032200:c3805950-3805805 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
