Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2868833..2868978 | Replicon | chromosome |
| Accession | NZ_CP032185 | ||
| Organism | Klebsiella pneumoniae strain AR_0075 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2868840..2868942 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2868833..2868978 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM454_RS14620 | 2864364..2865797 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM454_RS14625 | 2865913..2866152 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM454_RS14630 | 2866250..2866441 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM454_RS14635 | 2866438..2867091 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| AM454_RS14640 | 2867248..2868216 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM454_RS31335 | 2868321..2868464 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2868833..2868978 | + | 146 | - | - | Antitoxin |
| - | 2868840..2868942 | - | 103 | - | - | Toxin |
| AM454_RS14650 | 2869101..2869439 | - | 339 | WP_009307539.1 | YebY family protein | - |
| AM454_RS14655 | 2869456..2870325 | - | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| AM454_RS14660 | 2870329..2870703 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM454_RS14665 | 2870816..2871046 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM454_RS14670 | 2871125..2871784 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM454_RS14675 | 2871788..2873848 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111275 NZ_CP032185:c2868942-2868840 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT111275 NZ_CP032185:2868833-2868978 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
