Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 139009..139154 | Replicon | chromosome |
| Accession | NZ_CP032175 | ||
| Organism | Klebsiella pneumoniae strain AR_0160 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 139016..139118 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 139009..139154 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM406_RS01920 | 134541..135974 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM406_RS01925 | 136090..136329 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM406_RS01930 | 136427..136618 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM406_RS01935 | 136615..137268 | - | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| AM406_RS01940 | 137425..138393 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| AM406_RS27895 | 138498..138641 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 139009..139154 | + | 146 | - | - | Antitoxin |
| - | 139016..139118 | - | 103 | - | - | Toxin |
| AM406_RS01950 | 139277..139615 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM406_RS01955 | 139632..140501 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| AM406_RS01960 | 140505..140879 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM406_RS01965 | 140992..141222 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM406_RS01970 | 141301..141960 | + | 660 | WP_032410389.1 | exodeoxyribonuclease X | - |
| AM406_RS01975 | 141964..144024 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111235 NZ_CP032175:c139118-139016 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT111235 NZ_CP032175:139009-139154 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
