Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3383908..3384176 | Replicon | chromosome |
| Accession | NZ_CP032078 | ||
| Organism | Escherichia coli strain CT30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3383946..3384048 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3383908..3384176 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2195_RS16305 | 3381065..3382504 | + | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D2195_RS16310 | 3382622..3382858 | + | 237 | WP_001295499.1 | YebV family protein | - |
| D2195_RS16315 | 3382963..3383154 | + | 192 | WP_001317886.1 | YebW family protein | - |
| D2195_RS16320 | 3383155..3383811 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 3383908..3384176 | + | 269 | - | - | Antitoxin |
| - | 3383946..3384048 | - | 103 | - | - | Toxin |
| D2195_RS16325 | 3384206..3384547 | - | 342 | WP_000976472.1 | YebY family protein | - |
| D2195_RS16330 | 3384560..3385432 | - | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| D2195_RS16335 | 3385436..3385810 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| D2195_RS16340 | 3385949..3386179 | + | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| D2195_RS16345 | 3386281..3386937 | + | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| D2195_RS16350 | 3386961..3387623 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111031 NZ_CP032078:c3384048-3383946 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT111031 NZ_CP032078:3383908-3384176 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
