Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 881526..882361 | Replicon | chromosome |
| Accession | NZ_CP032078 | ||
| Organism | Escherichia coli strain CT30 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | D2195_RS04280 | Protein ID | WP_057109034.1 |
| Coordinates | 881526..881903 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A7W3AJG7 |
| Locus tag | D2195_RS04285 | Protein ID | WP_001389198.1 |
| Coordinates | 881993..882361 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2195_RS04245 (876608) | 876608..877213 | + | 606 | WP_001318033.1 | type II secretion system minor pseudopilin GspJ | - |
| D2195_RS04250 (877210) | 877210..878187 | + | 978 | WP_000633196.1 | type II secretion system minor pseudopilin GspK | - |
| D2195_RS04255 (878184) | 878184..879362 | + | 1179 | WP_000097200.1 | type II secretion system protein GspL | - |
| D2195_RS04260 (879364) | 879364..879900 | + | 537 | WP_000942807.1 | GspM family type II secretion system protein YghD | - |
| D2195_RS04265 (880180) | 880180..881022 | - | 843 | WP_039004748.1 | DUF4942 domain-containing protein | - |
| D2195_RS04270 (881107) | 881107..881304 | - | 198 | WP_023563519.1 | DUF957 domain-containing protein | - |
| D2195_RS04275 (881380) | 881380..881529 | - | 150 | Protein_852 | DUF5983 family protein | - |
| D2195_RS04280 (881526) | 881526..881903 | - | 378 | WP_057109034.1 | TA system toxin CbtA family protein | Toxin |
| D2195_RS04285 (881993) | 881993..882361 | - | 369 | WP_001389198.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| D2195_RS04290 (882441) | 882441..882662 | - | 222 | WP_000692287.1 | DUF987 domain-containing protein | - |
| D2195_RS04295 (882749) | 882749..883225 | - | 477 | WP_001186744.1 | RadC family protein | - |
| D2195_RS04300 (883241) | 883241..883726 | - | 486 | WP_000213717.1 | antirestriction protein | - |
| D2195_RS04305 (883803) | 883803..884621 | - | 819 | WP_001175170.1 | DUF932 domain-containing protein | - |
| D2195_RS04310 (884711) | 884711..884944 | - | 234 | WP_001278288.1 | DUF905 family protein | - |
| D2195_RS04315 (884950) | 884950..885627 | - | 678 | WP_001097362.1 | hypothetical protein | - |
| D2195_RS04320 (885746) | 885746..886630 | - | 885 | WP_000010399.1 | 50S ribosome-binding GTPase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13934.86 Da Isoelectric Point: 6.8517
>T111022 WP_057109034.1 NZ_CP032078:c881903-881526 [Escherichia coli]
MKTLPDTHVREASCCPSPVTIWQTLLTRLLDQHYGLALNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEAKQ
MKTLPDTHVREASCCPSPVTIWQTLLTRLLDQHYGLALNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEAKQ
Download Length: 378 bp
>T111022 NZ_CP032078:c881903-881526 [Escherichia coli]
ATGAAAACATTACCCGACACGCATGTACGGGAGGCATCGTGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGGTTACTGGACCAGCACTACGGCCTCGCGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AAGCGGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCTCGTCGCAGTTAATCAACAGCATTGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACCGAACAGTAAATAACATTACTCTGGGTAAGCATCCGGAGGCGAAACAATGA
ATGAAAACATTACCCGACACGCATGTACGGGAGGCATCGTGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGGTTACTGGACCAGCACTACGGCCTCGCGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AAGCGGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCTCGTCGCAGTTAATCAACAGCATTGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACCGAACAGTAAATAACATTACTCTGGGTAAGCATCCGGAGGCGAAACAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13610.39 Da Isoelectric Point: 6.3159
>AT111022 WP_001389198.1 NZ_CP032078:c882361-881993 [Escherichia coli]
VSDTLPGTTHPDDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
VSDTLPGTTHPDDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
Download Length: 369 bp
>AT111022 NZ_CP032078:c882361-881993 [Escherichia coli]
GTGTCAGACACACTCCCCGGGACAACGCATCCCGACGATAACAACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTTGGGGCACGTCTTGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCGTACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACACACTCCCCGGGACAACGCATCCCGACGATAACAACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTTGGGGCACGTCTTGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCGTACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|