Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1918037..1918308 | Replicon | chromosome |
| Accession | NZ_CP032073 | ||
| Organism | Escherichia coli strain CT29 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1918167..1918270 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1918037..1918308 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2194_RS09140 | 1914592..1915254 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| D2194_RS09145 | 1915278..1915934 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| D2194_RS09150 | 1916036..1916266 | - | 231 | WP_212403383.1 | DNA polymerase III subunit theta | - |
| D2194_RS09155 | 1916405..1916779 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| D2194_RS09160 | 1916783..1917655 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| D2194_RS09165 | 1917668..1918009 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1918037..1918308 | - | 272 | - | - | Antitoxin |
| - | 1918167..1918270 | + | 104 | - | - | Toxin |
| D2194_RS09170 | 1918405..1919061 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| D2194_RS09175 | 1919062..1919253 | - | 192 | WP_001313035.1 | YebW family protein | - |
| D2194_RS09180 | 1919358..1919594 | - | 237 | WP_001295499.1 | YebV family protein | - |
| D2194_RS09185 | 1919712..1921151 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110998 NZ_CP032073:1918167-1918270 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT110998 NZ_CP032073:c1918308-1918037 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
