Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 966386..967221 | Replicon | chromosome |
| Accession | NZ_CP032073 | ||
| Organism | Escherichia coli strain CT29 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | D2194_RS04650 | Protein ID | WP_057109034.1 |
| Coordinates | 966844..967221 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A1E5MC43 |
| Locus tag | D2194_RS04645 | Protein ID | WP_063112944.1 |
| Coordinates | 966386..966754 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2194_RS04605 (961579) | 961579..962463 | + | 885 | WP_032216515.1 | 50S ribosome-binding GTPase | - |
| D2194_RS04610 (962582) | 962582..963259 | + | 678 | WP_063091580.1 | hypothetical protein | - |
| D2194_RS04615 (963265) | 963265..963417 | + | 153 | WP_001696589.1 | DUF905 family protein | - |
| D2194_RS04620 (963518) | 963518..964336 | + | 819 | WP_001234688.1 | DUF932 domain-containing protein | - |
| D2194_RS04625 (964418) | 964418..964897 | + | 480 | WP_000860074.1 | antirestriction protein | - |
| D2194_RS04630 (964913) | 964913..965389 | + | 477 | WP_001366830.1 | RadC family protein | - |
| D2194_RS04635 (965452) | 965452..965673 | + | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| D2194_RS04640 (965692) | 965692..966336 | + | 645 | WP_045146861.1 | hypothetical protein | - |
| D2194_RS04645 (966386) | 966386..966754 | + | 369 | WP_063112944.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| D2194_RS04650 (966844) | 966844..967221 | + | 378 | WP_057109034.1 | TA system toxin CbtA family protein | Toxin |
| D2194_RS04655 (967218) | 967218..967367 | + | 150 | Protein_925 | DUF5983 family protein | - |
| D2194_RS04660 (967443) | 967443..967640 | + | 198 | WP_023563519.1 | DUF957 domain-containing protein | - |
| D2194_RS04665 (967725) | 967725..968567 | + | 843 | WP_001529559.1 | DUF4942 domain-containing protein | - |
| D2194_RS04670 (968849) | 968849..969385 | - | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| D2194_RS04675 (969387) | 969387..970565 | - | 1179 | Protein_929 | type II secretion system protein GspL | - |
| D2194_RS04680 (970562) | 970562..971539 | - | 978 | WP_001411127.1 | type II secretion system minor pseudopilin GspK | - |
| D2194_RS04685 (971542) | 971542..972141 | - | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13934.86 Da Isoelectric Point: 6.8517
>T110996 WP_057109034.1 NZ_CP032073:966844-967221 [Escherichia coli]
MKTLPDTHVREASCCPSPVTIWQTLLTRLLDQHYGLALNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEAKQ
MKTLPDTHVREASCCPSPVTIWQTLLTRLLDQHYGLALNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEAKQ
Download Length: 378 bp
>T110996 NZ_CP032073:966844-967221 [Escherichia coli]
ATGAAAACATTACCCGACACGCATGTACGGGAGGCATCGTGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGGTTACTGGACCAGCACTACGGCCTCGCGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AAGCGGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCTCGTCGCAGTTAATCAACAGCATTGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACCGAACAGTAAATAACATTACTCTGGGTAAGCATCCGGAGGCGAAACAATGA
ATGAAAACATTACCCGACACGCATGTACGGGAGGCATCGTGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGGTTACTGGACCAGCACTACGGCCTCGCGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AAGCGGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCTCGTCGCAGTTAATCAACAGCATTGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACCGAACAGTAAATAACATTACTCTGGGTAAGCATCCGGAGGCGAAACAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13724.52 Da Isoelectric Point: 6.8270
>AT110996 WP_063112944.1 NZ_CP032073:966386-966754 [Escherichia coli]
VSDTLPGTTHHDDNHDRLWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYHPDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLPGTTHHDDNHDRLWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYHPDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT110996 NZ_CP032073:966386-966754 [Escherichia coli]
GTGTCAGACACACTCCCCGGGACAACGCATCACGACGACAATCACGACCGCCTCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCATCCGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACACACTCCCCGGGACAACGCATCACGACGACAATCACGACCGCCTCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCATCCGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|