Detailed information of TA system TA110948

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): phd-doc/Fic(toxin)
• Location: 4476228..4476793
• Replicon: chromosome
• Accession: NZ_CP032052
• Organism: Streptomyces clavuligerus strain F1D-5

Toxin (Protein)

• Gene name: doc
• Uniprot ID: E2Q583
• Locus tag: D1794_RS18875
• Protein ID: WP_003960643.1
• Coordinates: 4476425..4476793 (+)
• Length: 123 a.a.

Antitoxin (Protein)

• Gene name: phd
• Uniprot ID: -
• Locus tag: D1794_RS18870
• Protein ID: WP_029182939.1
• Coordinates: 4476228..4476425 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
D1794_RS18855	4473615..4474178	+	564	WP_003954788.1	AAA family ATPase	-
D1794_RS18865	4474689..4476194	+	1506	WP_003954790.1	MFS transporter	-
D1794_RS18870	4476228..4476425	+	198	WP_029182939.1	Arc family DNA-binding protein	Antitoxin
D1794_RS18875	4476425..4476793	+	369	WP_003960643.1	Fic family protein	Toxin
D1794_RS18880	4476951..4478744	+	1794	WP_003954793.1	DEAD/DEAH box helicase	-
D1794_RS18885	4479046..4479687	+	642	WP_009996313.1	helix-turn-helix domain-containing protein	-
D1794_RS18890	4480152..4480940	+	789	WP_065757152.1	hypothetical protein	-
D1794_RS18895	4481005..4481475	-	471	WP_003954796.1	Lrp/AsnC family transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Death on curing protein (19-119)

Antitoxin

• Arc-like DNA binding domain (5-29)

Sequences

Toxin

Protein

• Length: 123 a.a.
• Molecular weight: 13688.61 Da
• Isoelectric Point: 5.1348

>T110948 WP_003960643.1 NZ_CP032052:4476425-4476793 [Streptomyces clavuligerus]
MHYLTLPELLNLAERLRAAEVRDYGLLDSALARPQASVFGQDAYPDVWQKAAALMESLARNHGLVDGNKRIAWYATWVFL
HVNGHPLDPEFDVDEAERFVLDVCQGALDVPKIASGLLRFAR

Nucleotide

• Length: 369 bp

>T110948 NZ_CP032052:4476425-4476793 [Streptomyces clavuligerus]
ATGCACTACCTCACCCTGCCCGAGCTGCTGAACCTCGCGGAGCGGCTGCGGGCGGCCGAGGTGCGCGACTACGGTCTGCT
GGACTCCGCCCTCGCGCGCCCCCAGGCGAGCGTCTTCGGCCAGGACGCCTACCCGGATGTCTGGCAGAAGGCCGCCGCCC
TGATGGAGTCCCTGGCCCGCAACCACGGACTGGTCGACGGCAACAAGCGGATCGCCTGGTATGCCACCTGGGTCTTTCTC
CATGTGAACGGCCATCCGCTGGACCCGGAATTCGACGTGGACGAGGCGGAACGGTTTGTTCTGGACGTCTGCCAGGGGGC
ACTCGACGTCCCCAAGATCGCGTCGGGGCTGCTGCGCTTCGCCCGCTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 7424.32 Da
• Isoelectric Point: 5.7030

>AT110948 WP_029182939.1 NZ_CP032052:4476228-4476425 [Streptomyces clavuligerus]
MAGLNVRFTEEELTALRERAEAEGRSMQSFAHDAVIRAINERARLFNEAAEHVLRASEELNRRLA

Nucleotide

• Length: 198 bp

>AT110948 NZ_CP032052:4476228-4476425 [Streptomyces clavuligerus]
ATGGCTGGTCTCAATGTGCGATTCACCGAGGAAGAGCTCACCGCCCTGCGGGAGCGGGCCGAAGCGGAGGGCCGCAGTAT
GCAGTCCTTCGCGCACGACGCGGTGATCAGAGCGATCAACGAACGCGCGCGGCTGTTCAACGAGGCCGCCGAGCATGTGC
TGAGGGCGAGCGAGGAGCTGAACCGGAGGCTCGCCTGA

Structures

Toxin

• AlphaFold DB: E2Q583