110863

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 4527878..4528510 Replicon chromosome
Accession NZ_CP031968
Organism Chromobacterium rhizoryzae strain JP2-74

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag D1345_RS20705 Protein ID WP_019103135.1
Coordinates 4528094..4528510 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag D1345_RS20700 Protein ID WP_118268404.1
Coordinates 4527878..4528090 (+) Length 71 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D1345_RS20690 4523462..4524595 + 1134 WP_043589639.1 efflux RND transporter periplasmic adaptor subunit -
D1345_RS20695 4524595..4527681 + 3087 WP_118268403.1 efflux RND transporter permease subunit -
D1345_RS20700 4527878..4528090 + 213 WP_118268404.1 DNA-binding protein Antitoxin
D1345_RS20705 4528094..4528510 + 417 WP_019103135.1 type II toxin-antitoxin system VapC family toxin Toxin
D1345_RS20710 4528516..4529013 - 498 WP_019103134.1 CNP1-like family protein -
D1345_RS20715 4529029..4529808 - 780 WP_019103133.1 NRDE family protein -
D1345_RS20720 4529998..4530228 + 231 WP_043589636.1 sulfurtransferase TusA family protein -
D1345_RS20725 4530428..4531465 + 1038 WP_019101759.1 dihydroorotase -
D1345_RS20730 4531522..4531863 - 342 WP_019101760.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
D1345_RS24245 4531860..4532024 - 165 WP_157222062.1 hypothetical protein -
D1345_RS20735 4532166..4532915 + 750 WP_043589632.1 sulfite exporter TauE/SafE family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-121)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15101.20 Da        Isoelectric Point: 6.7178

>T110863 WP_019103135.1 NZ_CP031968:4528094-4528510 [Chromobacterium rhizoryzae]
VYLVDTNIVSEARKGGKANAGVLAFWRSADADSLYLSAISVGEIRRGIENLKHRGDLKQAGLLEQWLDTITQEFSQRILN
FDADCAQVWGKLMSPHPQNAVDKQIAAIALIHDLTIVTRNSGDFAGTGVKLLNPFNPI

Download         Length: 417 bp

>T110863 NZ_CP031968:4528094-4528510 [Chromobacterium rhizoryzae]
GTGTATCTGGTGGACACCAATATCGTCAGCGAGGCTCGCAAAGGCGGCAAAGCCAATGCAGGCGTGCTCGCCTTCTGGCG
ATCGGCGGACGCGGACAGCCTCTATCTGTCCGCCATCAGCGTGGGGGAAATTCGCCGCGGCATAGAGAATCTCAAGCATC
GCGGCGACCTCAAGCAGGCCGGCCTGCTGGAACAATGGCTGGACACCATCACCCAGGAATTTTCCCAACGCATTCTGAAC
TTCGATGCCGATTGCGCCCAGGTATGGGGCAAGTTGATGTCCCCTCATCCCCAAAACGCCGTCGACAAGCAAATCGCCGC
CATCGCGCTGATCCACGACCTGACGATCGTGACCCGCAATAGCGGCGATTTTGCCGGCACCGGCGTCAAACTATTGAATC
CGTTCAACCCGATCTAA

Antitoxin


Download         Length: 71 a.a.        Molecular weight: 7866.88 Da        Isoelectric Point: 6.4684

>AT110863 WP_118268404.1 NZ_CP031968:4527878-4528090 [Chromobacterium rhizoryzae]
MPNLIVRNIDDEVAAELKRRAAAHGVSAEAEHRRILRSALLAQPKRRSFAEVLANMPDVGEDADFERSRE

Download         Length: 213 bp

>AT110863 NZ_CP031968:4527878-4528090 [Chromobacterium rhizoryzae]
ATGCCCAATCTGATCGTGCGCAATATCGACGATGAAGTCGCCGCGGAGCTCAAGCGTCGCGCGGCGGCCCACGGAGTCAG
CGCCGAAGCCGAGCATCGCCGCATTCTGCGCAGCGCCTTGCTCGCCCAACCCAAACGCCGCAGCTTTGCCGAAGTCCTGG
CCAATATGCCCGACGTGGGCGAAGACGCCGACTTCGAACGCAGCCGGGAATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References