Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2342027..2342261 | Replicon | chromosome |
| Accession | NZ_CP031922 | ||
| Organism | Escherichia coli O26:H11 strain FWSEC0001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2342157..2342260 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2342027..2342261 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9S25_RS11950 | 2338582..2339244 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| B9S25_RS11955 | 2339268..2339924 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| B9S25_RS11960 | 2340026..2340256 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B9S25_RS11965 | 2340395..2340769 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| B9S25_RS11970 | 2340773..2341645 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| B9S25_RS11975 | 2341658..2341999 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2342027..2342261 | - | 235 | - | - | Antitoxin |
| - | 2342157..2342260 | + | 104 | - | - | Toxin |
| B9S25_RS11980 | 2342392..2343468 | - | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| B9S25_RS11985 | 2343434..2343715 | - | 282 | WP_001443927.1 | excisionase | - |
| B9S25_RS11990 | 2343822..2344010 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2343826..2344004 | + | 179 | NuclAT_1 | - | - |
| - | 2343826..2344004 | + | 179 | NuclAT_1 | - | - |
| - | 2343826..2344004 | + | 179 | NuclAT_1 | - | - |
| - | 2343826..2344004 | + | 179 | NuclAT_1 | - | - |
| B9S25_RS11995 | 2344003..2344197 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| B9S25_RS12000 | 2344254..2345063 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110790 NZ_CP031922:2342157-2342260 [Escherichia coli O26:H11]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT110790 NZ_CP031922:c2342261-2342027 [Escherichia coli O26:H11]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
