Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3164691..3164925 | Replicon | chromosome |
| Accession | NZ_CP031916 | ||
| Organism | Escherichia coli O45:H2 strain FWSEC0003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3164692..3164795 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3164691..3164925 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCU02_RS16190 | 3161889..3162698 | + | 810 | WP_000166311.1 | recombination protein RecT | - |
| CCU02_RS16195 | 3162755..3162949 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| CCU02_RS16200 | 3162942..3163130 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 3162948..3163126 | - | 179 | NuclAT_1 | - | - |
| - | 3162948..3163126 | - | 179 | NuclAT_1 | - | - |
| - | 3162948..3163126 | - | 179 | NuclAT_1 | - | - |
| - | 3162948..3163126 | - | 179 | NuclAT_1 | - | - |
| CCU02_RS16205 | 3163237..3163518 | + | 282 | WP_001311878.1 | excisionase | - |
| CCU02_RS16210 | 3163484..3164560 | + | 1077 | WP_001189081.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3164691..3164925 | + | 235 | - | - | Antitoxin |
| - | 3164692..3164795 | - | 104 | - | - | Toxin |
| CCU02_RS16215 | 3164953..3165294 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CCU02_RS16220 | 3165307..3166179 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CCU02_RS16225 | 3166183..3166557 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| CCU02_RS16230 | 3166696..3166926 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CCU02_RS16235 | 3167028..3167684 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CCU02_RS16240 | 3167708..3168370 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110738 NZ_CP031916:c3164795-3164692 [Escherichia coli O45:H2]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTACTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTACTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT110738 NZ_CP031916:3164691-3164925 [Escherichia coli O45:H2]
TAAAAAAAGACCGAGTACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAGTACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
