Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2900242..2900513 | Replicon | chromosome |
| Accession | NZ_CP031912 | ||
| Organism | Escherichia coli O111:NM strain FWSEC0005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2900372..2900475 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2900242..2900513 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCU03_RS14490 | 2896797..2897459 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CCU03_RS14495 | 2897483..2898139 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CCU03_RS14500 | 2898241..2898471 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CCU03_RS14505 | 2898610..2898984 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CCU03_RS14510 | 2898988..2899860 | + | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| CCU03_RS14515 | 2899873..2900214 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2900242..2900513 | - | 272 | - | - | Antitoxin |
| - | 2900372..2900475 | + | 104 | - | - | Toxin |
| CCU03_RS14520 | 2900610..2901266 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CCU03_RS14525 | 2901267..2901458 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CCU03_RS14530 | 2901563..2901799 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CCU03_RS14535 | 2901917..2903356 | - | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110673 NZ_CP031912:2900372-2900475 [Escherichia coli O111:NM]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT110673 NZ_CP031912:c2900513-2900242 [Escherichia coli O111:NM]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
