Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2222510..2222781 | Replicon | chromosome |
| Accession | NZ_CP031908 | ||
| Organism | Escherichia coli O103:H2 strain FWSEC0007 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2222640..2222743 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2222510..2222781 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCU04_RS11180 | 2219065..2219727 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CCU04_RS11185 | 2219751..2220407 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CCU04_RS11190 | 2220509..2220739 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CCU04_RS11195 | 2220878..2221252 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| CCU04_RS11200 | 2221256..2222128 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CCU04_RS11205 | 2222141..2222482 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2222510..2222781 | - | 272 | - | - | Antitoxin |
| - | 2222640..2222743 | + | 104 | - | - | Toxin |
| CCU04_RS11210 | 2222878..2223534 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| CCU04_RS11215 | 2223535..2223726 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CCU04_RS11220 | 2223831..2224067 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CCU04_RS11225 | 2224185..2225624 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110613 NZ_CP031908:2222640-2222743 [Escherichia coli O103:H2]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT110613 NZ_CP031908:c2222781-2222510 [Escherichia coli O103:H2]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
