Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/-
Location 269081..269712 Replicon chromosome
Accession NZ_CP031906
Organism Escherichia coli O91:H21 strain FWSEC0008

Toxin (Protein)


Gene name hicA Uniprot ID F4NNK6
Locus tag CAX06_RS01240 Protein ID WP_001259388.1
Coordinates 269081..269356 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID U9Y7E1
Locus tag CAX06_RS01245 Protein ID WP_000593555.1
Coordinates 269353..269712 (+) Length 120 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CAX06_RS01225 264085..265152 + 1068 WP_000361483.1 HlyD family secretion protein -
CAX06_RS01230 265149..267884 + 2736 WP_000149125.1 ribosome-associated ATPase/putative transporter RbbA -
CAX06_RS01235 267884..269008 + 1125 WP_001314210.1 ABC transporter permease -
CAX06_RS01240 269081..269356 + 276 WP_001259388.1 type II toxin-antitoxin system HicA family toxin Toxin
CAX06_RS01245 269353..269712 + 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
CAX06_RS01250 269832..270233 - 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
CAX06_RS01255 270239..271045 - 807 WP_000173666.1 nickel import ATP-binding protein NikE -
CAX06_RS01260 271042..271806 - 765 WP_001136236.1 nickel import ATP-binding protein NikD -
CAX06_RS01265 271806..272639 - 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
CAX06_RS01270 272636..273580 - 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(30-80)

Antitoxin

Uncharacterised protein family HicB

(60-112)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10151.89 Da        Isoelectric Point: 10.7076

>T110579 WP_001259388.1 NZ_CP031906:269081-269356 [Escherichia coli O91:H21]
MRTKVQALRKKQKNTLDQIVKTPVPQGIKWSDIESLVKALGGEIKEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESV
RDWLLSIGVKP

Download         Length: 276 bp

>T110579 NZ_CP031906:269081-269356 [Escherichia coli O91:H21]
ATGAGAACCAAGGTACAGGCTTTACGGAAGAAACAAAAAAATACATTGGATCAAATAGTTAAAACTCCTGTTCCTCAAGG
GATCAAGTGGTCTGATATAGAGTCACTGGTTAAAGCATTAGGCGGAGAAATTAAGGAAGGAAGAGGTTCGCGTTGCAAGT
TCATACTAAATATGAGCGTTGCGTGTTTCCATCGGCCTCATCCGTCGCCAGATACCGATAAAGGCGCTGTAGAAAGCGTG
CGTGACTGGTTACTAAGTATAGGGGTAAAACCATGA

Antitoxin


Download         Length: 120 a.a.        Molecular weight: 13402.27 Da        Isoelectric Point: 5.1987

>AT110579 WP_000593555.1 NZ_CP031906:269353-269712 [Escherichia coli O91:H21]
MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSDSIQGLQKEGELSLREYLEDCKAAGIEPYARTEKIKT
FTLRYPESLSERLNNAAAQQQVSVNTYIIETLNERLNHL

Download         Length: 360 bp

>AT110579 NZ_CP031906:269353-269712 [Escherichia coli O91:H21]
ATGATCAAACTGAAGACGCCAAACTCTATGGAGATTGCCGGGCAACCTGCAGTTATCACTTACGTGCCAGAACTGAATGC
ATTTCGTGGCAAATTCCTGGGCTTGTCAGGTTATTGTGATTTTGTCTCTGACAGCATTCAGGGGCTGCAAAAAGAAGGGG
AACTTTCCCTGCGAGAGTATCTTGAGGATTGTAAAGCTGCGGGTATTGAGCCGTATGCGCGTACAGAAAAGATTAAGACC
TTTACGTTACGCTATCCAGAATCGCTGAGTGAACGCCTTAATAATGCGGCTGCGCAGCAACAAGTCTCTGTTAATACCTA
TATTATTGAAACACTGAATGAGCGTTTGAATCATTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0A0FFA2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LKZ6

References