Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2228877..2229148 | Replicon | chromosome |
| Accession | NZ_CP031902 | ||
| Organism | Escherichia coli O104:H4 strain FWSEC0009 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2229007..2229110 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2228877..2229148 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C8200_RS11175 | 2225432..2226094 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C8200_RS11180 | 2226118..2226774 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C8200_RS11185 | 2226876..2227106 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C8200_RS11190 | 2227245..2227619 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C8200_RS11195 | 2227623..2228495 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C8200_RS11200 | 2228508..2228849 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2228877..2229148 | - | 272 | - | - | Antitoxin |
| - | 2229007..2229110 | + | 104 | - | - | Toxin |
| C8200_RS11205 | 2229245..2229901 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| C8200_RS11210 | 2229902..2230093 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C8200_RS11215 | 2230198..2230434 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C8200_RS11220 | 2230552..2231991 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110558 NZ_CP031902:2229007-2229110 [Escherichia coli O104:H4]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT110558 NZ_CP031902:c2229148-2228877 [Escherichia coli O104:H4]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
