Detailed information of TA system
Overview
TA module
| Type | V | Classification (family/domain) | ghoTS/ghoT-GhoS |
| Location | 4446016..4446513 | Replicon | chromosome |
| Accession | NZ_CP031898 | ||
| Organism | Escherichia coli O113:H21 strain FWSEC0010 | ||
Toxin (Protein)
| Gene name | ghoT | Uniprot ID | - |
| Locus tag | C8201_RS21970 | Protein ID | WP_001173344.1 |
| Coordinates | 4446016..4446189 (-) | Length | 58 a.a. |
Antitoxin (Protein)
| Gene name | ghoS | Uniprot ID | L4JK92 |
| Locus tag | C8201_RS21975 | Protein ID | WP_000398619.1 |
| Coordinates | 4446217..4446513 (-) | Length | 99 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C8201_RS21960 | 4442686..4444143 | + | 1458 | WP_000856832.1 | dipeptide/tripeptide permease DtpC | - |
| C8201_RS21965 | 4444380..4445897 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| C8201_RS21970 | 4446016..4446189 | - | 174 | WP_001173344.1 | type V toxin-antitoxin system toxin GhoT | Toxin |
| C8201_RS21975 | 4446217..4446513 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin |
| C8201_RS21980 | 4446740..4447012 | - | 273 | WP_000405647.1 | N-acetyltransferase | - |
| C8201_RS21985 | 4447024..4447254 | - | 231 | WP_000371700.1 | (4Fe-4S)-binding protein | - |
| C8201_RS21990 | 4447435..4449066 | + | 1632 | WP_001216461.1 | sensor histidine kinase | - |
| C8201_RS21995 | 4449063..4449782 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 58 a.a. Molecular weight: 6583.12 Da Isoelectric Point: 10.2288
>T110547 WP_001173344.1 NZ_CP031898:c4446189-4446016 [Escherichia coli O113:H21]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSVFLVGITWPMSLPVALLFSLF
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSVFLVGITWPMSLPVALLFSLF
Download Length: 174 bp
>T110547 NZ_CP031898:c4446189-4446016 [Escherichia coli O113:H21]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGTATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGTATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
Antitoxin
Download Length: 99 a.a. Molecular weight: 11467.97 Da Isoelectric Point: 4.1705
>AT110547 WP_000398619.1 NZ_CP031898:c4446513-4446217 [Escherichia coli O113:H21]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK
Download Length: 297 bp
>AT110547 NZ_CP031898:c4446513-4446217 [Escherichia coli O113:H21]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CTTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GATTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CTTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GATTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|