Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | relBE/YoeB-YefM |
Location | 1461253..1461761 | Replicon | chromosome |
Accession | NZ_CP031873 | ||
Organism | Actinobacillus pleuropneumoniae serovar 4 str. M62 |
Toxin (Protein)
Gene name | relE | Uniprot ID | B0BQK9 |
Locus tag | D1097_RS06730 | Protein ID | WP_005605064.1 |
Coordinates | 1461501..1461761 (+) | Length | 87 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A3N1S6 |
Locus tag | D1097_RS06725 | Protein ID | WP_005605062.1 |
Coordinates | 1461253..1461504 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
D1097_RS06680 (D1097_06700) | 1456665..1457213 | - | 549 | WP_005605049.1 | type IV pilus biogenesis/stability protein PilW | - |
D1097_RS06685 (D1097_06705) | 1457267..1458448 | - | 1182 | WP_005605050.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
D1097_RS06715 (D1097_06735) | 1459476..1460915 | + | 1440 | WP_005605060.1 | glutamate--tRNA ligase | - |
D1097_RS06725 (D1097_06745) | 1461253..1461504 | + | 252 | WP_005605062.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
D1097_RS06730 (D1097_06750) | 1461501..1461761 | + | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | Toxin |
D1097_RS06735 (D1097_06755) | 1461920..1462087 | - | 168 | WP_005605066.1 | Trm112 family protein | - |
D1097_RS06740 (D1097_06760) | 1462089..1463069 | - | 981 | WP_005605069.1 | tetraacyldisaccharide 4'-kinase | - |
D1097_RS06745 (D1097_06765) | 1463164..1464423 | - | 1260 | Protein_1317 | ATP-dependent protease ATP-binding subunit ClpX | - |
D1097_RS06750 (D1097_06770) | 1464423..1465013 | - | 591 | WP_005598326.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
D1097_RS06755 (D1097_06775) | 1465135..1465527 | + | 393 | WP_005620423.1 | SufE family protein | - |
D1097_RS06770 (D1097_06790) | 1465886..1466659 | - | 774 | WP_043990950.1 | DNA polymerase III subunit epsilon | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 87 a.a. Molecular weight: 10423.99 Da Isoelectric Point: 8.0109
>T110452 WP_005605064.1 NZ_CP031873:1461501-1461761 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
MKLTFSSNAWEDYLYWQKTDKIILKRINSLIKDIQRQPFEGIGKLEPLKFNLSGFWSRRINEEHRLIYSVEDEAILIVAC
RYHYDQ
MKLTFSSNAWEDYLYWQKTDKIILKRINSLIKDIQRQPFEGIGKLEPLKFNLSGFWSRRINEEHRLIYSVEDEAILIVAC
RYHYDQ
Download Length: 261 bp
>T110452 NZ_CP031873:1461501-1461761 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
ATGAAGCTAACTTTCTCGTCTAATGCGTGGGAAGATTATTTATACTGGCAAAAAACCGATAAAATAATTTTGAAACGTAT
AAACAGTCTGATTAAAGATATTCAACGCCAACCATTTGAAGGCATAGGAAAACTGGAGCCGCTAAAATTCAATCTTTCGG
GATTTTGGTCAAGGCGAATCAATGAAGAACACCGCTTAATTTACAGCGTGGAAGATGAAGCAATTTTAATAGTAGCGTGT
AGATACCATTATGATCAGTAA
ATGAAGCTAACTTTCTCGTCTAATGCGTGGGAAGATTATTTATACTGGCAAAAAACCGATAAAATAATTTTGAAACGTAT
AAACAGTCTGATTAAAGATATTCAACGCCAACCATTTGAAGGCATAGGAAAACTGGAGCCGCTAAAATTCAATCTTTCGG
GATTTTGGTCAAGGCGAATCAATGAAGAACACCGCTTAATTTACAGCGTGGAAGATGAAGCAATTTTAATAGTAGCGTGT
AGATACCATTATGATCAGTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9320.62 Da Isoelectric Point: 4.5659
>AT110452 WP_005605062.1 NZ_CP031873:1461253-1461504 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
MQAITYTEARQNLAGTMSKVAEDFEPILITRSKGGNCVLMSYEQYSSLEETAYLMRSPANAQRLLDSMAELKQGKGIERE
LIE
MQAITYTEARQNLAGTMSKVAEDFEPILITRSKGGNCVLMSYEQYSSLEETAYLMRSPANAQRLLDSMAELKQGKGIERE
LIE
Download Length: 252 bp
>AT110452 NZ_CP031873:1461253-1461504 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
ATGCAAGCAATAACCTACACAGAAGCACGCCAAAATCTAGCCGGTACAATGTCAAAAGTAGCAGAAGATTTTGAGCCTAT
TTTAATTACAAGAAGCAAGGGCGGAAATTGCGTACTTATGTCGTATGAGCAGTATAGTTCACTTGAAGAAACCGCCTATT
TAATGCGTTCCCCGGCTAACGCTCAAAGATTACTAGACAGCATGGCAGAATTGAAGCAAGGGAAAGGCATTGAAAGAGAG
CTAATCGAATGA
ATGCAAGCAATAACCTACACAGAAGCACGCCAAAATCTAGCCGGTACAATGTCAAAAGTAGCAGAAGATTTTGAGCCTAT
TTTAATTACAAGAAGCAAGGGCGGAAATTGCGTACTTATGTCGTATGAGCAGTATAGTTCACTTGAAGAAACCGCCTATT
TAATGCGTTCCCCGGCTAACGCTCAAAGATTACTAGACAGCATGGCAGAATTGAAGCAAGGGAAAGGCATTGAAAGAGAG
CTAATCGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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