Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
Location | 2944739..2945286 | Replicon | chromosome |
Accession | NZ_CP031848 | ||
Organism | Marinobacter sp. Arc7-DN-1 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | D0851_RS13825 | Protein ID | WP_117619163.1 |
Coordinates | 2944984..2945286 (+) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | D0851_RS13820 | Protein ID | WP_117619162.1 |
Coordinates | 2944739..2944996 (+) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
D0851_RS13790 | 2939830..2941314 | - | 1485 | WP_117619157.1 | hypothetical protein | - |
D0851_RS13795 | 2941541..2941684 | + | 144 | WP_117619158.1 | hypothetical protein | - |
D0851_RS13800 | 2941761..2942468 | + | 708 | WP_162893742.1 | hypothetical protein | - |
D0851_RS13805 | 2942481..2943632 | + | 1152 | WP_117619160.1 | GAF domain-containing protein | - |
D0851_RS13810 | 2943596..2944258 | + | 663 | WP_117619161.1 | EAL domain-containing protein | - |
D0851_RS13820 | 2944739..2944996 | + | 258 | WP_117619162.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
D0851_RS13825 | 2944984..2945286 | + | 303 | WP_117619163.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
D0851_RS13830 | 2945583..2945852 | + | 270 | WP_117619164.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
D0851_RS13835 | 2945853..2946152 | + | 300 | WP_117619165.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
D0851_RS13845 | 2946271..2946801 | - | 531 | WP_117619166.1 | cytochrome b | - |
D0851_RS13850 | 2947045..2947770 | + | 726 | WP_117619167.1 | response regulator | - |
D0851_RS13855 | 2947767..2949209 | + | 1443 | WP_117619168.1 | HAMP domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11558.27 Da Isoelectric Point: 4.4663
>T110347 WP_117619163.1 NZ_CP031848:2944984-2945286 [Marinobacter sp. Arc7-DN-1]
MAEVIWTEPALQELDAIAEYVDLDNPAAASHLVEEVFDKTERLQDFPQSGRIPPELPNSVYREVVVPPCRIFFREDKKRV
LILCVMREERQLRAYILGSS
MAEVIWTEPALQELDAIAEYVDLDNPAAASHLVEEVFDKTERLQDFPQSGRIPPELPNSVYREVVVPPCRIFFREDKKRV
LILCVMREERQLRAYILGSS
Download Length: 303 bp
>T110347 NZ_CP031848:2944984-2945286 [Marinobacter sp. Arc7-DN-1]
ATGGCTGAAGTAATCTGGACGGAGCCCGCGCTTCAGGAACTGGACGCTATTGCCGAGTACGTTGATCTGGATAATCCTGC
TGCCGCAAGCCATTTGGTCGAAGAAGTCTTCGATAAAACCGAGCGTTTGCAGGATTTTCCCCAATCCGGACGGATTCCTC
CGGAGCTCCCCAATTCGGTATACAGAGAAGTAGTGGTGCCCCCTTGTCGAATTTTTTTTCGTGAAGATAAGAAACGGGTT
CTCATACTCTGTGTTATGAGAGAGGAGCGGCAGCTTCGTGCATACATACTTGGGAGTAGCTAA
ATGGCTGAAGTAATCTGGACGGAGCCCGCGCTTCAGGAACTGGACGCTATTGCCGAGTACGTTGATCTGGATAATCCTGC
TGCCGCAAGCCATTTGGTCGAAGAAGTCTTCGATAAAACCGAGCGTTTGCAGGATTTTCCCCAATCCGGACGGATTCCTC
CGGAGCTCCCCAATTCGGTATACAGAGAAGTAGTGGTGCCCCCTTGTCGAATTTTTTTTCGTGAAGATAAGAAACGGGTT
CTCATACTCTGTGTTATGAGAGAGGAGCGGCAGCTTCGTGCATACATACTTGGGAGTAGCTAA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9783.37 Da Isoelectric Point: 9.0174
>AT110347 WP_117619162.1 NZ_CP031848:2944739-2944996 [Marinobacter sp. Arc7-DN-1]
MKVELVTNLKRQATKILADLHLSKEPILITEHGQPSAYLVDVQDYEFMQRRLELLEGLSRGERAVLEGRTCSQSEARAKM
SKWLK
MKVELVTNLKRQATKILADLHLSKEPILITEHGQPSAYLVDVQDYEFMQRRLELLEGLSRGERAVLEGRTCSQSEARAKM
SKWLK
Download Length: 258 bp
>AT110347 NZ_CP031848:2944739-2944996 [Marinobacter sp. Arc7-DN-1]
ATGAAAGTTGAGCTTGTTACGAACCTCAAGCGCCAAGCCACGAAGATTCTGGCGGACCTGCATTTGTCAAAGGAGCCGAT
ACTGATCACGGAGCATGGTCAGCCATCGGCCTATCTTGTCGATGTTCAGGATTACGAGTTTATGCAGCGCCGGCTTGAGC
TGCTTGAGGGGCTCTCACGGGGAGAGCGTGCGGTACTTGAGGGAAGAACATGCAGCCAAAGTGAGGCCAGGGCGAAAATG
AGTAAATGGCTGAAGTAA
ATGAAAGTTGAGCTTGTTACGAACCTCAAGCGCCAAGCCACGAAGATTCTGGCGGACCTGCATTTGTCAAAGGAGCCGAT
ACTGATCACGGAGCATGGTCAGCCATCGGCCTATCTTGTCGATGTTCAGGATTACGAGTTTATGCAGCGCCGGCTTGAGC
TGCTTGAGGGGCTCTCACGGGGAGAGCGTGCGGTACTTGAGGGAAGAACATGCAGCCAAAGTGAGGCCAGGGCGAAAATG
AGTAAATGGCTGAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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