Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 2944739..2945286 Replicon chromosome
Accession NZ_CP031848
Organism Marinobacter sp. Arc7-DN-1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag D0851_RS13825 Protein ID WP_117619163.1
Coordinates 2944984..2945286 (+) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag D0851_RS13820 Protein ID WP_117619162.1
Coordinates 2944739..2944996 (+) Length 86 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D0851_RS13790 2939830..2941314 - 1485 WP_117619157.1 hypothetical protein -
D0851_RS13795 2941541..2941684 + 144 WP_117619158.1 hypothetical protein -
D0851_RS13800 2941761..2942468 + 708 WP_162893742.1 hypothetical protein -
D0851_RS13805 2942481..2943632 + 1152 WP_117619160.1 GAF domain-containing protein -
D0851_RS13810 2943596..2944258 + 663 WP_117619161.1 EAL domain-containing protein -
D0851_RS13820 2944739..2944996 + 258 WP_117619162.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
D0851_RS13825 2944984..2945286 + 303 WP_117619163.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
D0851_RS13830 2945583..2945852 + 270 WP_117619164.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
D0851_RS13835 2945853..2946152 + 300 WP_117619165.1 type II toxin-antitoxin system RelE/ParE family toxin -
D0851_RS13845 2946271..2946801 - 531 WP_117619166.1 cytochrome b -
D0851_RS13850 2947045..2947770 + 726 WP_117619167.1 response regulator -
D0851_RS13855 2947767..2949209 + 1443 WP_117619168.1 HAMP domain-containing protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 101 a.a.        Molecular weight: 11558.27 Da        Isoelectric Point: 4.4663

>T110347 WP_117619163.1 NZ_CP031848:2944984-2945286 [Marinobacter sp. Arc7-DN-1]
MAEVIWTEPALQELDAIAEYVDLDNPAAASHLVEEVFDKTERLQDFPQSGRIPPELPNSVYREVVVPPCRIFFREDKKRV
LILCVMREERQLRAYILGSS

Download         Length: 303 bp

>T110347 NZ_CP031848:2944984-2945286 [Marinobacter sp. Arc7-DN-1]
ATGGCTGAAGTAATCTGGACGGAGCCCGCGCTTCAGGAACTGGACGCTATTGCCGAGTACGTTGATCTGGATAATCCTGC
TGCCGCAAGCCATTTGGTCGAAGAAGTCTTCGATAAAACCGAGCGTTTGCAGGATTTTCCCCAATCCGGACGGATTCCTC
CGGAGCTCCCCAATTCGGTATACAGAGAAGTAGTGGTGCCCCCTTGTCGAATTTTTTTTCGTGAAGATAAGAAACGGGTT
CTCATACTCTGTGTTATGAGAGAGGAGCGGCAGCTTCGTGCATACATACTTGGGAGTAGCTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9783.37 Da        Isoelectric Point: 9.0174

>AT110347 WP_117619162.1 NZ_CP031848:2944739-2944996 [Marinobacter sp. Arc7-DN-1]
MKVELVTNLKRQATKILADLHLSKEPILITEHGQPSAYLVDVQDYEFMQRRLELLEGLSRGERAVLEGRTCSQSEARAKM
SKWLK

Download         Length: 258 bp

>AT110347 NZ_CP031848:2944739-2944996 [Marinobacter sp. Arc7-DN-1]
ATGAAAGTTGAGCTTGTTACGAACCTCAAGCGCCAAGCCACGAAGATTCTGGCGGACCTGCATTTGTCAAAGGAGCCGAT
ACTGATCACGGAGCATGGTCAGCCATCGGCCTATCTTGTCGATGTTCAGGATTACGAGTTTATGCAGCGCCGGCTTGAGC
TGCTTGAGGGGCTCTCACGGGGAGAGCGTGCGGTACTTGAGGGAAGAACATGCAGCCAAAGTGAGGCCAGGGCGAAAATG
AGTAAATGGCTGAAGTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References