Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 3303659..3304198 Replicon chromosome
Accession NZ_CP031841
Organism Breoghania sp. L-A4

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag D1F64_RS15125 Protein ID WP_117413097.1
Coordinates 3303911..3304198 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag D1F64_RS15120 Protein ID WP_117413096.1
Coordinates 3303659..3303907 (+) Length 83 a.a.

Genomic Context

D1F64_RS15120D1F64_RS15125D1F64_RS15130D1F64_RS15135D1F64_RS15140D1F64_RS15145D1F64_RS15150D1F64_RS15155D1F64_RS15095D1F64_RS15100D1F64_RS15105D1F64_RS15110D1F64_RS15115
Location: 3303659..3303907 (249 bp)
Type: Antitoxin
Protein ID: WP_117413096.1
Location: 3303911..3304198 (288 bp)
Type: Toxin
Protein ID: WP_117413097.1
Location: 3304323..3304592 (270 bp)
Type: Others
Protein ID: WP_117414632.1
Location: 3304604..3305794 (1191 bp)
Type: Others
Protein ID: WP_117413098.1
Location: 3305906..3306685 (780 bp)
Type: Others
Protein ID: WP_117413099.1
Location: 3306750..3307256 (507 bp)
Type: Others
Protein ID: WP_117413100.1
Location: 3307357..3307716 (360 bp)
Type: Others
Protein ID: WP_162901586.1
Location: 3307812..3308480 (669 bp)
Type: Others
Protein ID: WP_205470490.1
Location: 3298758..3298973 (216 bp)
Type: Others
Protein ID: WP_117413092.1
Location: 3299111..3299950 (840 bp)
Type: Others
Protein ID: WP_117413093.1
Location: 3300132..3301127 (996 bp)
Type: Others
Protein ID: WP_162901585.1
Location: 3301543..3302399 (857 bp)
Type: Others
Protein ID: Protein_3036
Location: 3302420..3303208 (789 bp)
Type: Others
Protein ID: WP_117413095.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
D1F64_RS150953298758..3298973-216WP_117413092.1DUF3126 family protein-
D1F64_RS151003299111..3299950-840WP_117413093.1serine O-acetyltransferase-
D1F64_RS151053300132..3301127-996WP_162901585.1hypothetical protein-
D1F64_RS151103301543..3302399-857Protein_3036alpha/beta hydrolase-
D1F64_RS151153302420..3303208-789WP_117413095.1alpha/beta hydrolase-
D1F64_RS151203303659..3303907+249WP_117413096.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
D1F64_RS151253303911..3304198+288WP_117413097.1type II toxin-antitoxin system RelE/ParE family toxinToxin
D1F64_RS151303304323..3304592+270WP_117414632.1zinc-finger domain-containing protein-
D1F64_RS151353304604..3305794+1191WP_117413098.1FAD-dependent monooxygenase-
D1F64_RS151403305906..3306685+780WP_117413099.1competence/damage-inducible protein A-
D1F64_RS151453306750..3307256+507WP_117413100.1xanthine phosphoribosyltransferase-
D1F64_RS151503307357..3307716+360WP_162901586.1hypothetical protein-
D1F64_RS151553307812..3308480+669WP_205470490.1L,D-transpeptidase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10991.70 Da        Isoelectric Point: 10.1822

>T110307 WP_117413097.1 NZ_CP031841:3303911-3304198 [Breoghania sp. L-A4]
MRLQFLPAARADLDAIFDYTVKQWGLAQAERYLRDMQATCESLRAGRIKGRSAEHVRSGYRKAASGSHMIYFKLADERLI
VVRILHQSMDVERHL

Download         Length: 288 bp

>T110307 NZ_CP031841:3303911-3304198 [Breoghania sp. L-A4]
ATGCGGCTCCAGTTTTTACCAGCCGCGAGAGCCGATCTGGACGCCATTTTTGATTACACTGTGAAACAATGGGGACTGGC
GCAGGCCGAGCGCTATCTTCGTGACATGCAGGCGACCTGTGAAAGTCTGCGCGCCGGTCGCATCAAGGGTCGCTCGGCCG
AGCACGTGCGCAGTGGCTACCGCAAGGCGGCGTCAGGATCTCACATGATCTATTTCAAACTGGCCGACGAGCGGCTCATC
GTCGTCCGCATCCTGCACCAGAGCATGGACGTCGAGCGGCATCTCTGA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8657.50 Da        Isoelectric Point: 4.5388

>AT110307 WP_117413096.1 NZ_CP031841:3303659-3303907 [Breoghania sp. L-A4]
MSRNTSVSLGDHFAGFVDQSVKTGRYASASDVVRAGLRLLEEQEAKLDILRSALAAGETSGEPEDFDFDAYIAGKTSKST
GG

Download         Length: 249 bp

>AT110307 NZ_CP031841:3303659-3303907 [Breoghania sp. L-A4]
ATGTCCCGCAACACATCCGTCTCGCTGGGCGATCATTTCGCCGGCTTTGTCGACCAGAGTGTCAAGACCGGCCGATATGC
GAGCGCCAGCGATGTGGTGCGCGCAGGCCTCCGGCTGCTCGAAGAACAGGAAGCAAAGCTGGATATCCTGAGATCAGCAT
TGGCCGCCGGCGAAACCTCCGGCGAGCCGGAAGACTTCGATTTCGATGCCTACATCGCCGGGAAGACGTCAAAAAGCACG
GGCGGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References