Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2023657..2023928 | Replicon | chromosome |
| Accession | NZ_CP031833 | ||
| Organism | Escherichia coli strain 2452 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2023787..2023890 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2023657..2023928 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0R13_RS10340 | 2020212..2020874 | - | 663 | WP_001556661.1 | exodeoxyribonuclease X | - |
| D0R13_RS10345 | 2020898..2021554 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| D0R13_RS10350 | 2021656..2021886 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D0R13_RS10355 | 2022025..2022399 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| D0R13_RS10360 | 2022403..2023275 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| D0R13_RS10365 | 2023288..2023629 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2023657..2023928 | - | 272 | - | - | Antitoxin |
| - | 2023787..2023890 | + | 104 | - | - | Toxin |
| D0R13_RS10370 | 2024025..2024681 | + | 657 | WP_001556660.1 | protein-serine/threonine phosphatase | - |
| D0R13_RS10375 | 2024682..2024873 | - | 192 | WP_001338167.1 | YebW family protein | - |
| D0R13_RS10380 | 2024978..2025214 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| D0R13_RS10385 | 2025332..2026771 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110254 NZ_CP031833:2023787-2023890 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT110254 NZ_CP031833:c2023928-2023657 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
