Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1881894..1882039 | Replicon | chromosome |
| Accession | NZ_CP031817 | ||
| Organism | Klebsiella pneumoniae strain INF235-sc-2280127 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1881930..1882032 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1881894..1882039 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0898_RS09350 | 1877024..1879084 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| D0898_RS09355 | 1879088..1879747 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| D0898_RS09360 | 1879826..1880056 | - | 231 | WP_064181481.1 | DNA polymerase III subunit theta | - |
| D0898_RS09365 | 1880169..1880543 | + | 375 | WP_064181480.1 | CopC domain-containing protein YobA | - |
| D0898_RS09370 | 1880547..1881416 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| D0898_RS09375 | 1881433..1881771 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1881894..1882039 | - | 146 | - | - | Antitoxin |
| - | 1881930..1882032 | + | 103 | - | - | Toxin |
| D0898_RS28320 | 1882407..1882550 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| D0898_RS09385 | 1882655..1883623 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| D0898_RS09390 | 1883780..1884433 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| D0898_RS09395 | 1884430..1884621 | - | 192 | WP_002911395.1 | YebW family protein | - |
| D0898_RS09400 | 1884719..1884958 | - | 240 | WP_002911393.1 | YebV family protein | - |
| D0898_RS09405 | 1885074..1886507 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T110227 NZ_CP031817:1881930-1882032 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT110227 NZ_CP031817:c1882039-1881894 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
