Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1928018..1928163 | Replicon | chromosome |
| Accession | NZ_CP031808 | ||
| Organism | Klebsiella pneumoniae strain INF206-sc-2280074 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1928054..1928156 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1928018..1928163 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0896_RS09760 | 1923148..1925208 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| D0896_RS09765 | 1925212..1925871 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| D0896_RS09770 | 1925950..1926180 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| D0896_RS09775 | 1926293..1926667 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| D0896_RS09780 | 1926671..1927540 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| D0896_RS09785 | 1927557..1927895 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1928018..1928163 | - | 146 | - | - | Antitoxin |
| - | 1928054..1928156 | + | 103 | - | - | Toxin |
| D0896_RS28490 | 1928531..1928674 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| D0896_RS09795 | 1928779..1929747 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| D0896_RS09800 | 1929904..1930557 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| D0896_RS09805 | 1930554..1930745 | - | 192 | WP_002911395.1 | YebW family protein | - |
| D0896_RS09810 | 1930843..1931082 | - | 240 | WP_002911393.1 | YebV family protein | - |
| D0896_RS09815 | 1931198..1932631 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T110185 NZ_CP031808:1928054-1928156 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT110185 NZ_CP031808:c1928163-1928018 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
