Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 795121..795778 Replicon chromosome
Accession NZ_CP031808
Organism Klebsiella pneumoniae strain INF206-sc-2280074

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag D0896_RS04100 Protein ID WP_002916310.1
Coordinates 795368..795778 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag D0896_RS04095 Protein ID WP_002916312.1
Coordinates 795121..795387 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D0896_RS04070 790277..791710 - 1434 WP_002916322.1 6-phospho-beta-glucosidase BglA -
D0896_RS04075 791829..792557 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
D0896_RS04080 792607..792918 + 312 WP_004144734.1 N(4)-acetylcytidine aminohydrolase -
D0896_RS04085 793082..793741 + 660 WP_002916317.1 hemolysin III family protein -
D0896_RS04090 793892..794875 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
D0896_RS04095 795121..795387 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
D0896_RS04100 795368..795778 + 411 WP_002916310.1 protein YgfX Toxin
D0896_RS04105 795785..796306 - 522 WP_004144730.1 flavodoxin FldB -
D0896_RS04110 796407..797303 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
D0896_RS04115 797326..798039 + 714 WP_002916301.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
D0896_RS04120 798045..799778 + 1734 WP_004149758.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T110184 WP_002916310.1 NZ_CP031808:795368-795778 [Klebsiella pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

>T110184 NZ_CP031808:795368-795778 [Klebsiella pneumoniae]
GTGGTCCTGTGGCAATCTGATCTCCGTATCTCCTGGCGCGCGCAGTGGTTTTCCCTGCTGCTTCACGGCGTGGTGGCGGC
CCTGGTGCTGTTGGTTCCCTGGCCGCTGAGCTATACCCCGATCTGGCTGCTGCTGCTGTCGCTGGTGGTCTTCGACTGCG
TGCGCAGCCAGCGGCGGATCCATGCCCGTCGCGGGGAGATAAAACTGCTCACCGATTCCCGTCTTCGCTGGCAAAACGCC
GAATGGGAAATCCTCGGGACGCCGTGGGTTATCAATAGCGGTATGCTGCTGCGTTTGCGCCATGTCGATACCCGGCGCGG
ACAGCATCTTTGGCTGGCGGCGGACAGCATGGACGCCGGAGAGTGGCGCGATCTGCGCCGGCTGGTGCTGCAAAAACCGG
CGCAGGAGTAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT110184 WP_002916312.1 NZ_CP031808:795121-795387 [Klebsiella pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT110184 NZ_CP031808:795121-795387 [Klebsiella pneumoniae]
ATGGACATTAACAATAAAGCACGTATCCACTGGGCATGCCGCCGCGGGATGCGCGAACTCGACATCTCCATCATGCCGTT
CTTTGAGTATGAGTACGATACCCTCAGCGACGCTGACAAACAGCTGTTCATTCGCCTGCTGGAAAATGACGATCCGGATC
TGTTCAACTGGCTGATGAACCACGGCAAACCGGCCGATGCGGAGCTGCAGCGGATGGTAACCTTAATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References