Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 797185..797842 Replicon chromosome
Accession NZ_CP031798
Organism Klebsiella pneumoniae strain QMP B2-170

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag D0900_RS04065 Protein ID WP_002916310.1
Coordinates 797432..797842 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag D0900_RS04060 Protein ID WP_002916312.1
Coordinates 797185..797451 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D0900_RS04035 792341..793774 - 1434 WP_002916322.1 6-phospho-beta-glucosidase BglA -
D0900_RS04040 793893..794621 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
D0900_RS04045 794671..794982 + 312 WP_004144734.1 N(4)-acetylcytidine aminohydrolase -
D0900_RS04050 795146..795805 + 660 WP_002916317.1 hemolysin III family protein -
D0900_RS04055 795956..796939 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
D0900_RS04060 797185..797451 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
D0900_RS04065 797432..797842 + 411 WP_002916310.1 protein YgfX Toxin
D0900_RS04070 797849..798370 - 522 WP_004144730.1 flavodoxin FldB -
D0900_RS04075 798471..799367 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
D0900_RS04080 799390..800103 + 714 WP_004174456.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
D0900_RS04085 800109..801842 + 1734 WP_004149758.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T110141 WP_002916310.1 NZ_CP031798:797432-797842 [Klebsiella pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

>T110141 NZ_CP031798:797432-797842 [Klebsiella pneumoniae]
GTGGTCCTGTGGCAATCTGATCTCCGTATCTCCTGGCGCGCGCAGTGGTTTTCCCTGCTGCTTCACGGCGTGGTGGCGGC
CCTGGTGCTGTTGGTTCCCTGGCCGCTGAGCTATACCCCGATCTGGCTGCTGCTGCTGTCGCTGGTGGTCTTCGACTGCG
TGCGCAGCCAGCGGCGGATCCATGCCCGTCGCGGGGAGATAAAACTGCTCACCGATTCCCGTCTTCGCTGGCAAAACGCC
GAATGGGAGATCCTCGGGACGCCGTGGGTTATCAATAGCGGTATGCTGCTGCGTTTGCGCCATGTCGATACCCGGCGCGG
ACAGCATCTTTGGCTGGCGGCGGACAGCATGGACGCCGGAGAGTGGCGCGATCTGCGCCGGCTGGTGCTGCAAAAACCGG
CGCAGGAGTAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT110141 WP_002916312.1 NZ_CP031798:797185-797451 [Klebsiella pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT110141 NZ_CP031798:797185-797451 [Klebsiella pneumoniae]
ATGGACATTAACAATAAAGCACGTATCCACTGGGCATGCCGCCGCGGGATGCGCGAACTCGACATCTCCATCATGCCGTT
CTTTGAGTATGAGTACGATACCCTCAGCGACGCTGACAAACAGCTGTTCATTCGCCTGCTGGAAAATGACGATCCGGATC
TGTTCAACTGGCTGATGAACCACGGCAAACCGGCCGATGCGGAGCTGCAGCGGATGGTAACCTTAATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References