Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1595717..1595811 Replicon chromosome
Accession NZ_CP031780
Organism Yersinia pseudotuberculosis strain FDAARGOS_342

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1595718..1595811 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1595717..1595811 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CEQ20_RS07425 1590923..1593001 - 2079 WP_012413652.1 flagellar biosynthesis protein FlhA -
CEQ20_RS07430 1593001..1594161 - 1161 WP_050320623.1 flagellar type III secretion system protein FlhB -
CEQ20_RS07435 1594680..1595138 + 459 WP_002211098.1 hypothetical protein -
CEQ20_RS07440 1595132..1595458 + 327 WP_002211097.1 DUF1493 family protein -
- 1595717..1595811 + 95 - - Antitoxin
- 1595718..1595811 - 94 - - Toxin
CEQ20_RS07450 1595981..1596322 - 342 WP_002211095.1 YebY family protein -
CEQ20_RS07455 1596419..1597303 - 885 WP_012304224.1 copper homeostasis membrane protein CopD -
CEQ20_RS07460 1597306..1597692 - 387 WP_002211093.1 CopC domain-containing protein YobA -
CEQ20_RS07465 1598071..1598580 - 510 WP_002211092.1 non-heme ferritin -
CEQ20_RS07470 1598981..1599211 + 231 WP_002211091.1 DNA polymerase III subunit theta -
CEQ20_RS07475 1599271..1600221 - 951 WP_011192157.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T110043 NZ_CP031780:c1595811-1595718 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT110043 NZ_CP031780:1595717-1595811 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References