Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 1069609..1070171 Replicon chromosome
Accession NZ_CP031769
Organism Salinimonas sediminis strain N102

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag D0Y50_RS04865 Protein ID WP_117315786.1
Coordinates 1069609..1069890 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag D0Y50_RS04870 Protein ID WP_117315788.1
Coordinates 1069887..1070171 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D0Y50_RS04835 1065571..1066353 + 783 WP_108567829.1 ParA family protein -
D0Y50_RS04840 1066343..1067104 + 762 WP_108567828.1 chemotaxis protein CheW -
D0Y50_RS04845 1067128..1067619 + 492 WP_108567827.1 chemotaxis protein CheW -
D0Y50_RS04850 1067734..1068159 + 426 WP_108567826.1 DUF2802 domain-containing protein -
D0Y50_RS04855 1068279..1068724 - 446 Protein_953 phage integrase N-terminal SAM-like domain-containing protein -
D0Y50_RS04860 1069231..1069542 + 312 WP_117315784.1 hypothetical protein -
D0Y50_RS04865 1069609..1069890 - 282 WP_117315786.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
D0Y50_RS04870 1069887..1070171 - 285 WP_117315788.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
D0Y50_RS04875 1070560..1071933 + 1374 WP_108567820.1 serine hydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-89)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10817.56 Da        Isoelectric Point: 4.8228

>T110021 WP_117315786.1 NZ_CP031769:c1069890-1069609 [Salinimonas sediminis]
MTVWEKSSLDDREAIFEFLYEFNPLAAEKTDAIISNKVENLNQQPLMGVERERIPGRLLIIPEVSMIVSYFIKDDIINIL
RVLHQKQKFPVGN

Download         Length: 282 bp

>T110021 NZ_CP031769:c1069890-1069609 [Salinimonas sediminis]
ATGACCGTTTGGGAAAAAAGTTCGCTGGACGACCGTGAGGCTATTTTCGAGTTTCTATACGAATTTAACCCATTAGCCGC
AGAAAAAACTGATGCAATAATTTCGAATAAAGTCGAAAACTTGAATCAACAACCTCTAATGGGAGTTGAGAGAGAGAGAA
TACCGGGAAGGTTGTTAATAATTCCTGAGGTTTCTATGATTGTTTCATATTTCATAAAAGACGATATCATTAATATTCTC
CGAGTTTTACACCAAAAACAAAAATTTCCTGTAGGTAACTAA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 11037.49 Da        Isoelectric Point: 7.1705

>AT110021 WP_117315788.1 NZ_CP031769:c1070171-1069887 [Salinimonas sediminis]
MDTRIQFRVDEETKRLAQIMAESQGRTLSDACRELTEELAEQQRKIITHDQWLTEEVNAAFNKLESGKSKFVSHEEANLD
MEARKMKIRNKARK

Download         Length: 285 bp

>AT110021 NZ_CP031769:c1070171-1069887 [Salinimonas sediminis]
ATGGATACTCGCATACAATTTAGAGTAGATGAAGAAACTAAACGGCTAGCTCAGATAATGGCCGAAAGCCAAGGGCGCAC
TTTAAGTGACGCTTGTAGAGAGCTTACGGAGGAACTTGCTGAACAGCAACGCAAAATAATTACTCATGATCAGTGGCTTA
CTGAAGAGGTGAATGCTGCCTTTAATAAATTAGAAAGTGGGAAAAGTAAGTTTGTCAGTCATGAAGAGGCGAACTTGGAC
ATGGAAGCTCGAAAAATGAAAATTAGGAATAAAGCCAGAAAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References