Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5087338..5087476 | Replicon | chromosome |
| Accession | NZ_CP031756 | ||
| Organism | Klebsiella aerogenes strain FDAARGOS_327 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5087338..5087441 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5087338..5087476 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEQ05_RS25610 | 5082555..5084891 | + | 2337 | WP_032716232.1 | hypothetical protein | - |
| CEQ05_RS25615 | 5084888..5085391 | + | 504 | WP_032716233.1 | siphovirus Gp157 family protein | - |
| CEQ05_RS25620 | 5085421..5085813 | + | 393 | WP_125961766.1 | hypothetical protein | - |
| CEQ05_RS25625 | 5085880..5086152 | + | 273 | WP_071609883.1 | excisionase | - |
| CEQ05_RS25630 | 5086127..5087206 | + | 1080 | WP_032708609.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 5087338..5087441 | - | 104 | - | - | Toxin |
| - | 5087338..5087476 | + | 139 | - | - | Antitoxin |
| CEQ05_RS25635 | 5087598..5087939 | - | 342 | WP_015366010.1 | YebY family protein | - |
| CEQ05_RS25640 | 5087953..5088822 | - | 870 | WP_032705951.1 | copper homeostasis membrane protein CopD | - |
| CEQ05_RS25645 | 5088826..5089200 | - | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| CEQ05_RS25650 | 5089335..5089565 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| CEQ05_RS25655 | 5089645..5090304 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| CEQ05_RS25660 | 5090307..5092367 | - | 2061 | WP_032705952.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 5021587..5108269 | 86682 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110009 NZ_CP031756:c5087441-5087338 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT110009 NZ_CP031756:5087338-5087476 [Klebsiella aerogenes]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
