Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4147551..4148170 Replicon chromosome
Accession NZ_CP031721
Organism Klebsiella pneumoniae strain SCKP020003

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag CAY64_RS22535 Protein ID WP_002892050.1
Coordinates 4147952..4148170 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag CAY64_RS22530 Protein ID WP_002892066.1
Coordinates 4147551..4147925 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CAY64_RS22520 4142703..4143896 + 1194 WP_002892072.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
CAY64_RS22525 4143919..4147065 + 3147 WP_020326861.1 multidrug efflux RND transporter permease subunit -
CAY64_RS22530 4147551..4147925 + 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
CAY64_RS22535 4147952..4148170 + 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
CAY64_RS22540 4148329..4148895 + 567 WP_002892030.1 maltose O-acetyltransferase -
CAY64_RS30110 4148867..4149007 - 141 WP_004147370.1 hypothetical protein -
CAY64_RS22545 4149028..4149498 + 471 WP_002892026.1 YlaC family protein -
CAY64_RS22550 4149473..4150924 - 1452 WP_002892023.1 PLP-dependent aminotransferase family protein -
CAY64_RS22555 4151025..4151723 + 699 WP_002892021.1 GNAT family N-acetyltransferase -
CAY64_RS22560 4151720..4151860 - 141 WP_002892018.1 type B 50S ribosomal protein L36 -
CAY64_RS22565 4151860..4152123 - 264 WP_002892011.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T109954 WP_002892050.1 NZ_CP031721:4147952-4148170 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T109954 NZ_CP031721:4147952-4148170 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT109954 WP_002892066.1 NZ_CP031721:4147551-4147925 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT109954 NZ_CP031721:4147551-4147925 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References