Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2043916..2044061 | Replicon | chromosome |
| Accession | NZ_CP031721 | ||
| Organism | Klebsiella pneumoniae strain SCKP020003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2043952..2044054 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2043916..2044061 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAY64_RS11730 | 2039046..2041106 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CAY64_RS11735 | 2041110..2041769 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CAY64_RS11740 | 2041848..2042078 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CAY64_RS11745 | 2042191..2042565 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CAY64_RS11750 | 2042569..2043438 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| CAY64_RS11755 | 2043455..2043793 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2043916..2044061 | - | 146 | - | - | Antitoxin |
| - | 2043952..2044054 | + | 103 | - | - | Toxin |
| CAY64_RS29000 | 2044429..2044572 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CAY64_RS11765 | 2044677..2045645 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CAY64_RS11770 | 2045802..2046455 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CAY64_RS11775 | 2046452..2046643 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CAY64_RS11780 | 2046741..2046980 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CAY64_RS11785 | 2047096..2048529 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T109945 NZ_CP031721:2043952-2044054 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT109945 NZ_CP031721:c2044061-2043916 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
