Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 350776..351428 Replicon chromosome
Accession NZ_CP031704
Organism Solimonas sp. K1W22B-7

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag D0B54_RS01710 Protein ID WP_117288606.1
Coordinates 351006..351428 (+) Length 141 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag D0B54_RS01705 Protein ID WP_117288604.1
Coordinates 350776..351009 (+) Length 78 a.a.

Genomic Context

D0B54_RS01690D0B54_RS01695D0B54_RS01700D0B54_RS01705D0B54_RS01710D0B54_RS24085D0B54_RS01720D0B54_RS01685D0B54_RS01715D0B54_RS24090D0B54_RS24095D0B54_RS01725
Location: 349326..349943 (618 bp)
Type: Others
Protein ID: WP_117288598.1
Location: 350109..350351 (243 bp)
Type: Others
Protein ID: WP_117288600.1
Location: 350377..350625 (249 bp)
Type: Others
Protein ID: WP_205527239.1
Location: 350776..351009 (234 bp)
Type: Antitoxin
Protein ID: WP_117288604.1
Location: 351006..351428 (423 bp)
Type: Toxin
Protein ID: WP_117288606.1
Location: 351834..352139 (306 bp)
Type: Others
Protein ID: WP_162932131.1
Location: 352254..352661 (408 bp)
Type: Others
Protein ID: WP_117288610.1
Location: 347743..349146 (1404 bp)
Type: Others
Protein ID: WP_117288596.1
Location: 351483..351791 (309 bp)
Type: Others
Protein ID: WP_117288608.1
Location: 352627..353397 (771 bp)
Type: Others
Protein ID: WP_162932132.1
Location: 353394..354227 (834 bp)
Type: Others
Protein ID: WP_162932133.1
Location: 354217..356103 (1887 bp)
Type: Others
Protein ID: WP_162932134.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
D0B54_RS01685347743..349146-1404WP_117288596.1efflux RND transporter periplasmic adaptor subunit-
D0B54_RS01690349326..349943+618WP_117288598.1TetR/AcrR family transcriptional regulator-
D0B54_RS01695350109..350351+243WP_117288600.1CopG family ribbon-helix-helix protein-
D0B54_RS01700350377..350625+249WP_205527239.1type II toxin-antitoxin system RelE/ParE family toxin-
D0B54_RS01705350776..351009+234WP_117288604.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
D0B54_RS01710351006..351428+423WP_117288606.1PIN domain-containing proteinToxin
D0B54_RS01715351483..351791-309WP_117288608.1type II toxin-antitoxin system RelB/DinJ family antitoxin-
D0B54_RS24085351834..352139+306WP_162932131.1hypothetical protein-
D0B54_RS01720352254..352661+408WP_117288610.1DNA mismatch endonuclease Vsr-
D0B54_RS24090352627..353397-771WP_162932132.1hypothetical protein-
D0B54_RS24095353394..354227-834WP_162932133.1hypothetical protein-
D0B54_RS01725354217..356103-1887WP_162932134.1hypothetical protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-114)

Antitoxin

SpoVT-AbrB domain

(5-34)


Sequences

Toxin        


Download         Length: 141 a.a.        Molecular weight: 15283.60 Da        Isoelectric Point: 4.5502

>T109889 WP_117288606.1 NZ_CP031704:351006-351428 [Solimonas sp. K1W22B-7]
VKPFLDTNILLYAVAQDDPRAEIADALLAAGGIISVQALNEFASVARRKLKMSWDEVHTALDAFQSLCPDPVPLTLETHE
QALQLAQKYGLNLYDALMASAAILAGCPLMYSEDMQDGLELERRLTIRNPFAAGAKPRSL

Download         Length: 423 bp

>T109889 NZ_CP031704:351006-351428 [Solimonas sp. K1W22B-7]
GTGAAACCCTTTCTGGACACCAACATCCTGCTCTACGCCGTGGCGCAGGACGACCCGCGGGCGGAGATCGCAGACGCGCT
GCTCGCGGCAGGCGGGATCATCAGCGTGCAGGCACTGAACGAGTTCGCTTCCGTCGCGCGGCGCAAGCTGAAAATGAGTT
GGGACGAAGTCCACACCGCCCTCGACGCATTCCAGTCCCTCTGCCCAGACCCTGTCCCGCTGACCCTGGAGACGCACGAG
CAGGCGCTGCAGTTGGCCCAGAAGTACGGGCTGAATCTCTACGACGCCCTCATGGCCTCTGCCGCGATACTCGCCGGCTG
CCCGCTGATGTATTCGGAAGACATGCAGGACGGGCTTGAACTCGAGCGCCGCCTCACCATCCGCAACCCGTTCGCCGCTG
GCGCGAAGCCCCGCAGCTTGTAG

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8906.15 Da        Isoelectric Point: 10.5728

>AT109889 WP_117288604.1 NZ_CP031704:350776-351009 [Solimonas sp. K1W22B-7]
MQVSKWGNSLAVRLPAAVVEALKLQEGDEIEIRIASEREFEVRRDGRKQAALERLRKLRRPLPDGFSFDRDDAQSRK

Download         Length: 234 bp

>AT109889 NZ_CP031704:350776-351009 [Solimonas sp. K1W22B-7]
ATGCAGGTATCCAAGTGGGGCAACAGCCTGGCCGTGCGCCTGCCCGCCGCAGTGGTCGAGGCGCTGAAGCTGCAGGAAGG
CGACGAGATCGAAATCCGCATCGCCTCCGAGCGCGAGTTCGAGGTCCGGCGCGACGGGCGCAAGCAGGCGGCGCTGGAGC
GCCTGCGCAAGCTGCGCCGCCCTCTGCCCGACGGCTTCAGCTTCGACCGTGACGACGCCCAGTCACGCAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References