Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2134082..2134353 | Replicon | chromosome |
| Accession | NZ_CP031653 | ||
| Organism | Escherichia coli strain UK_Dog_Liverpool | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2134212..2134315 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2134082..2134353 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DL545_RS11045 | 2130637..2131299 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DL545_RS11050 | 2131323..2131979 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DL545_RS11055 | 2132081..2132311 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DL545_RS11060 | 2132450..2132824 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| DL545_RS11065 | 2132828..2133700 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| DL545_RS11070 | 2133713..2134054 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2134082..2134353 | - | 272 | - | - | Antitoxin |
| - | 2134212..2134315 | + | 104 | - | - | Toxin |
| DL545_RS11075 | 2134450..2135106 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| DL545_RS11080 | 2135107..2135298 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DL545_RS11085 | 2135403..2135639 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DL545_RS11090 | 2135757..2137196 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T109631 NZ_CP031653:2134212-2134315 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT109631 NZ_CP031653:c2134353-2134082 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
