Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1943148..1943293 | Replicon | chromosome |
| Accession | NZ_CP031613 | ||
| Organism | Klebsiella pneumoniae strain ZYST1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1943184..1943286 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1943148..1943293 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DWV03_RS09815 | 1938278..1940338 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DWV03_RS09820 | 1940342..1941001 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DWV03_RS09825 | 1941080..1941310 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DWV03_RS09830 | 1941423..1941797 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DWV03_RS09835 | 1941801..1942670 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| DWV03_RS09840 | 1942687..1943025 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1943148..1943293 | - | 146 | - | - | Antitoxin |
| - | 1943184..1943286 | + | 103 | - | - | Toxin |
| DWV03_RS28740 | 1943662..1943805 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DWV03_RS09850 | 1943910..1944878 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DWV03_RS09855 | 1945035..1945688 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| DWV03_RS09860 | 1945685..1945876 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DWV03_RS09865 | 1945974..1946213 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DWV03_RS09870 | 1946329..1947762 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T109549 NZ_CP031613:1943184-1943286 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT109549 NZ_CP031613:c1943293-1943148 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
