Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3018833..3019101 | Replicon | chromosome |
| Accession | NZ_CP031609 | ||
| Organism | Escherichia coli strain N3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3018960..3019063 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3018833..3019101 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXA56_RS14870 | 3015386..3016048 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AXA56_RS14875 | 3016072..3016728 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| AXA56_RS14880 | 3016830..3017060 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AXA56_RS14885 | 3017199..3017573 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| AXA56_RS14890 | 3017577..3018449 | + | 873 | WP_042003773.1 | copper homeostasis membrane protein CopD | - |
| AXA56_RS14895 | 3018462..3018803 | + | 342 | WP_077779160.1 | YebY family protein | - |
| - | 3018833..3019101 | - | 269 | - | - | Antitoxin |
| - | 3018960..3019063 | + | 104 | - | - | Toxin |
| AXA56_RS14900 | 3019198..3019854 | + | 657 | WP_042003772.1 | protein-serine/threonine phosphatase | - |
| AXA56_RS14905 | 3019855..3020046 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AXA56_RS14910 | 3020151..3020387 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AXA56_RS14915 | 3020505..3021944 | - | 1440 | WP_116836816.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2995048..3034941 | 39893 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T109532 NZ_CP031609:3018960-3019063 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT109532 NZ_CP031609:c3019101-3018833 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
