Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/RelE-RHH |
| Location | 885666..886234 | Replicon | chromosome |
| Accession | NZ_CP031606 | ||
| Organism | Pseudomonas sp. phDV1 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | W6QTT6 |
| Locus tag | DZC76_RS04035 | Protein ID | WP_004424733.1 |
| Coordinates | 885666..885947 (-) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | W6RBZ2 |
| Locus tag | DZC76_RS04040 | Protein ID | WP_004424730.1 |
| Coordinates | 885944..886234 (-) | Length | 97 a.a. |
Genomic Context
Location: 883006..885663 (2658 bp)
Type: Others
Protein ID: WP_116617931.1
Type: Others
Protein ID: WP_116617931.1
Location: 886500..886751 (252 bp)
Type: Others
Protein ID: WP_004424728.1
Type: Others
Protein ID: WP_004424728.1
Location: 886751..887176 (426 bp)
Type: Others
Protein ID: WP_084340296.1
Type: Others
Protein ID: WP_084340296.1
Location: 887286..888821 (1536 bp)
Type: Others
Protein ID: WP_004424723.1
Type: Others
Protein ID: WP_004424723.1
Location: 888818..889360 (543 bp)
Type: Others
Protein ID: WP_004424722.1
Type: Others
Protein ID: WP_004424722.1
Location: 889371..890513 (1143 bp)
Type: Others
Protein ID: WP_116617932.1
Type: Others
Protein ID: WP_116617932.1
Location: 890516..891178 (663 bp)
Type: Others
Protein ID: WP_116617933.1
Type: Others
Protein ID: WP_116617933.1
Location: 885666..885947 (282 bp)
Type: Toxin
Protein ID: WP_004424733.1
Type: Toxin
Protein ID: WP_004424733.1
Location: 885944..886234 (291 bp)
Type: Antitoxin
Protein ID: WP_004424730.1
Type: Antitoxin
Protein ID: WP_004424730.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DZC76_RS04030 | 883006..885663 | + | 2658 | WP_116617931.1 | CRISPR-associated helicase Cas3' | - |
| DZC76_RS04035 | 885666..885947 | - | 282 | WP_004424733.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| DZC76_RS04040 | 885944..886234 | - | 291 | WP_004424730.1 | hypothetical protein | Antitoxin |
| DZC76_RS04045 | 886500..886751 | + | 252 | WP_004424728.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| DZC76_RS04050 | 886751..887176 | + | 426 | WP_084340296.1 | type II toxin-antitoxin system VapC family toxin | - |
| DZC76_RS04055 | 887286..888821 | + | 1536 | WP_004424723.1 | type I-E CRISPR-associated protein Cse1/CasA | - |
| DZC76_RS04060 | 888818..889360 | + | 543 | WP_004424722.1 | type I-E CRISPR-associated protein Cse2/CasB | - |
| DZC76_RS04065 | 889371..890513 | + | 1143 | WP_116617932.1 | type I-E CRISPR-associated protein Cas7/Cse4/CasC | - |
| DZC76_RS04070 | 890516..891178 | + | 663 | WP_116617933.1 | type I-E CRISPR-associated protein Cas5/CasD | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10565.07 Da Isoelectric Point: 8.6765
>T109512 WP_004424733.1 NZ_CP031606:c885947-885666 [Pseudomonas sp. phDV1]
VKLAWTRLALNDRQAIRSYIAQDNPIATLALDELFTEKASRLADHPGLGRPGRVSGTRELVVHQHDLMIYDLVNDQVRIL
RVLHTARQWPSAD
VKLAWTRLALNDRQAIRSYIAQDNPIATLALDELFTEKASRLADHPGLGRPGRVSGTRELVVHQHDLMIYDLVNDQVRIL
RVLHTARQWPSAD
Download Length: 282 bp
>T109512 NZ_CP031606:c885947-885666 [Pseudomonas sp. phDV1]
GTGAAACTGGCCTGGACGCGTCTTGCGCTGAACGACCGCCAAGCCATCCGCAGTTATATCGCCCAGGACAATCCCATTGC
CACCCTGGCGCTGGATGAATTGTTCACGGAGAAGGCCAGCCGCCTGGCCGATCATCCCGGCTTGGGGCGACCAGGCCGGG
TAAGCGGCACTCGCGAACTGGTTGTGCATCAGCACGATCTGATGATCTACGACCTGGTCAATGACCAAGTACGGATACTC
CGCGTGTTGCATACGGCCCGCCAGTGGCCAAGTGCAGACTGA
GTGAAACTGGCCTGGACGCGTCTTGCGCTGAACGACCGCCAAGCCATCCGCAGTTATATCGCCCAGGACAATCCCATTGC
CACCCTGGCGCTGGATGAATTGTTCACGGAGAAGGCCAGCCGCCTGGCCGATCATCCCGGCTTGGGGCGACCAGGCCGGG
TAAGCGGCACTCGCGAACTGGTTGTGCATCAGCACGATCTGATGATCTACGACCTGGTCAATGACCAAGTACGGATACTC
CGCGTGTTGCATACGGCCCGCCAGTGGCCAAGTGCAGACTGA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10878.08 Da Isoelectric Point: 4.7266
>AT109512 WP_004424730.1 NZ_CP031606:c886234-885944 [Pseudomonas sp. phDV1]
MSEATFTFRVDDALKSEFAQAAKARDRTGAQLLRDFMRDFVRQQQEAAEHDVWLRRQVQMGLDSANAGELLSSEEVEAEA
AAWRAEMRRKLDSAAS
MSEATFTFRVDDALKSEFAQAAKARDRTGAQLLRDFMRDFVRQQQEAAEHDVWLRRQVQMGLDSANAGELLSSEEVEAEA
AAWRAEMRRKLDSAAS
Download Length: 291 bp
>AT109512 NZ_CP031606:c886234-885944 [Pseudomonas sp. phDV1]
ATGAGTGAAGCCACCTTTACCTTTCGCGTAGACGACGCCCTGAAAAGCGAATTTGCCCAGGCAGCCAAGGCCCGCGACCG
TACCGGCGCGCAGTTGCTGCGCGACTTCATGCGCGACTTCGTCCGGCAGCAGCAAGAGGCCGCCGAGCACGATGTCTGGC
TGCGCCGCCAGGTACAGATGGGGCTGGATTCGGCCAATGCCGGTGAGTTGCTCAGCAGCGAAGAGGTCGAAGCCGAAGCC
GCCGCATGGCGCGCTGAAATGCGCCGCAAGCTGGACAGCGCCGCGTCGTGA
ATGAGTGAAGCCACCTTTACCTTTCGCGTAGACGACGCCCTGAAAAGCGAATTTGCCCAGGCAGCCAAGGCCCGCGACCG
TACCGGCGCGCAGTTGCTGCGCGACTTCATGCGCGACTTCGTCCGGCAGCAGCAAGAGGCCGCCGAGCACGATGTCTGGC
TGCGCCGCCAGGTACAGATGGGGCTGGATTCGGCCAATGCCGGTGAGTTGCTCAGCAGCGAAGAGGTCGAAGCCGAAGCC
GCCGCATGGCGCGCTGAAATGCGCCGCAAGCTGGACAGCGCCGCGTCGTGA