Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 320810..321371 Replicon chromosome
Accession NZ_CP031598
Organism Roseovarius indicus strain DSM 26383

Toxin (Protein)


Gene name relE Uniprot ID A0A5P3A8B3
Locus tag RIdsm_RS01555 Protein ID WP_074940361.1
Coordinates 320810..321085 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag RIdsm_RS01560 Protein ID WP_057816357.1
Coordinates 321078..321371 (-) Length 98 a.a.

Genomic Context

RIdsm_RS01535RIdsm_RS01540RIdsm_RS01545RIdsm_RS01550RIdsm_RS01555RIdsm_RS01560RIdsm_RS01565RIdsm_RS29995RIdsm_RS01570RIdsm_RS01575
Location: 316440..317603 (1164 bp)
Type: Others
Protein ID: WP_057816358.1
Location: 317603..318835 (1233 bp)
Type: Others
Protein ID: WP_074940359.1
Location: 318832..319029 (198 bp)
Type: Others
Protein ID: WP_082647388.1
Location: 319228..320676 (1449 bp)
Type: Others
Protein ID: WP_057816465.1
Location: 320810..321085 (276 bp)
Type: Toxin
Protein ID: WP_074940361.1
Location: 321078..321371 (294 bp)
Type: Antitoxin
Protein ID: WP_057816357.1
Location: 321486..322772 (1287 bp)
Type: Others
Protein ID: WP_057816356.1
Location: 322843..324213 (1371 bp)
Type: Others
Protein ID: WP_057816463.1
Location: 324415..324699 (285 bp)
Type: Others
Protein ID: WP_057816355.1
Location: 324802..325875 (1074 bp)
Type: Others
Protein ID: WP_057816354.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
RIdsm_RS01535316440..317603+1164WP_057816358.1FtsH protease activity modulator HflK-
RIdsm_RS01540317603..318835+1233WP_074940359.1protease modulator HflC-
RIdsm_RS01545318832..319029+198WP_082647388.1DUF2065 domain-containing protein-
RIdsm_RS01550319228..320676+1449WP_057816465.1DegQ family serine endoprotease-
RIdsm_RS01555320810..321085-276WP_074940361.1type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE familyToxin
RIdsm_RS01560321078..321371-294WP_057816357.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
RIdsm_RS01565321486..322772-1287WP_057816356.1ABC transporter substrate-binding protein-
RIdsm_RS29995322843..324213-1371WP_057816463.1hypothetical protein-
RIdsm_RS01570324415..324699-285WP_057816355.1YrhK family protein-
RIdsm_RS01575324802..325875-1074WP_057816354.1phenylalanine--tRNA ligase subunit alpha-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-58)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10189.83 Da        Isoelectric Point: 7.4014

>T109498 WP_074940361.1 NZ_CP031598:c321085-320810 [Roseovarius indicus]
VPELEWKASAVADLMAIVDYISNDNPDAALALLEKIEARVARLAEQPKTGRPGRVHGTRELVVHHNYIVIYAERPTVVTV
LRVLHAARMWP

Download         Length: 276 bp

>T109498 NZ_CP031598:c321085-320810 [Roseovarius indicus]
GTGCCTGAACTGGAATGGAAGGCGTCGGCGGTGGCTGACCTGATGGCCATCGTCGACTACATCTCGAACGATAACCCCGA
CGCGGCACTGGCCCTTTTGGAGAAGATCGAGGCCAGGGTGGCCCGCCTTGCCGAGCAGCCAAAGACAGGACGCCCCGGCC
GGGTTCATGGTACGCGGGAGCTGGTCGTTCACCACAATTACATCGTGATCTATGCCGAGCGCCCCACGGTGGTCACAGTG
CTGCGAGTGCTTCACGCGGCACGGATGTGGCCCTAA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 10315.74 Da        Isoelectric Point: 6.7249

>AT109498 WP_057816357.1 NZ_CP031598:c321371-321078 [Roseovarius indicus]
MPARTSMLHVRVDDHLKAQAAEALSGVGLTLSDAVRILLTRVAAEGGLPAGLTADPEAYDAWFRKKVQEALADTGPATPH
DEAMQDARALINRKRGA

Download         Length: 294 bp

>AT109498 NZ_CP031598:c321371-321078 [Roseovarius indicus]
ATGCCCGCCCGAACCTCAATGCTTCATGTTCGCGTCGATGACCATTTGAAGGCGCAGGCCGCCGAAGCCCTTTCCGGCGT
CGGCCTGACTCTGTCGGATGCGGTACGTATCCTGCTGACCCGCGTGGCGGCGGAAGGGGGGCTGCCCGCGGGCCTGACCG
CCGATCCGGAGGCGTATGACGCCTGGTTTCGCAAAAAGGTTCAGGAGGCGCTGGCCGATACCGGGCCAGCGACGCCGCAT
GACGAGGCCATGCAGGATGCTCGCGCGCTGATCAACAGGAAACGCGGTGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
AlphaFold DBA0A5P3A8B3

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References