Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4259765..4259910 | Replicon | chromosome |
| Accession | NZ_CP031577 | ||
| Organism | Klebsiella pneumoniae strain N4b | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4259801..4259903 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4259765..4259910 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXA58_RS21250 | 4254895..4256955 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AXA58_RS21255 | 4256959..4257618 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AXA58_RS21260 | 4257697..4257927 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AXA58_RS21265 | 4258040..4258414 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AXA58_RS21270 | 4258418..4259287 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AXA58_RS21275 | 4259304..4259642 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4259765..4259910 | - | 146 | - | - | Antitoxin |
| - | 4259801..4259903 | + | 103 | - | - | Toxin |
| AXA58_RS31120 | 4260279..4260422 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AXA58_RS21285 | 4260527..4261495 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AXA58_RS21290 | 4261652..4262305 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| AXA58_RS21295 | 4262302..4262493 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AXA58_RS21300 | 4262591..4262830 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AXA58_RS21305 | 4262946..4264379 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T109484 NZ_CP031577:4259801-4259903 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT109484 NZ_CP031577:c4259910-4259765 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
