Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3935851..3936051 | Replicon | chromosome |
| Accession | NZ_CP031574 | ||
| Organism | Enterobacter hormaechei strain A1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3935855..3935958 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3935851..3936051 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXA52_RS19110 | 3932110..3933558 | + | 1449 | WP_195892025.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AXA52_RS19115 | 3933665..3933904 | + | 240 | WP_003859885.1 | YebV family protein | - |
| AXA52_RS19120 | 3933939..3934583 | - | 645 | WP_116481123.1 | protein-serine/threonine phosphatase | - |
| AXA52_RS19125 | 3934751..3935731 | + | 981 | WP_045341271.1 | VirK/YbjX family protein | - |
| AXA52_RS19130 | 3935777..3935974 | + | 198 | WP_032669636.1 | hypothetical protein | - |
| - | 3935851..3936051 | + | 201 | - | - | Antitoxin |
| - | 3935855..3935958 | - | 104 | - | - | Toxin |
| AXA52_RS19135 | 3936100..3936438 | - | 339 | WP_003859787.1 | YebY family protein | - |
| AXA52_RS19140 | 3936455..3937324 | - | 870 | WP_045341273.1 | copper homeostasis membrane protein CopD | - |
| AXA52_RS19145 | 3937326..3937697 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| AXA52_RS19150 | 3937835..3938065 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AXA52_RS19155 | 3938177..3938827 | + | 651 | WP_045341276.1 | carbon-nitrogen hydrolase family protein | - |
| AXA52_RS19160 | 3938852..3939514 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3919197..4003676 | 84479 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T109462 NZ_CP031574:c3935958-3935855 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 201 bp
>AT109462 NZ_CP031574:3935851-3936051 [Enterobacter hormaechei]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
