Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1753060..1753260 | Replicon | chromosome |
| Accession | NZ_CP031571 | ||
| Organism | Enterobacter hormaechei strain N1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1753153..1753256 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1753060..1753260 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXA51_RS08745 | 1749597..1750259 | - | 663 | WP_129541410.1 | exodeoxyribonuclease X | - |
| AXA51_RS08750 | 1750284..1750934 | - | 651 | WP_129541411.1 | carbon-nitrogen hydrolase family protein | - |
| AXA51_RS08755 | 1751046..1751276 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AXA51_RS08760 | 1751414..1751785 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| AXA51_RS08765 | 1751787..1752656 | + | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| AXA51_RS08770 | 1752673..1753011 | + | 339 | WP_110292679.1 | YebY family protein | - |
| - | 1753060..1753260 | - | 201 | - | - | Antitoxin |
| AXA51_RS08775 | 1753137..1753334 | - | 198 | WP_032669636.1 | hypothetical protein | - |
| - | 1753153..1753256 | + | 104 | - | - | Toxin |
| AXA51_RS08780 | 1753380..1754360 | - | 981 | WP_045341271.1 | VirK/YbjX family protein | - |
| AXA51_RS08785 | 1754528..1755172 | + | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| AXA51_RS08790 | 1755207..1755446 | - | 240 | WP_003859885.1 | YebV family protein | - |
| AXA51_RS08795 | 1755553..1757001 | - | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1687491..1769913 | 82422 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T109443 NZ_CP031571:1753153-1753256 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 201 bp
>AT109443 NZ_CP031571:c1753260-1753060 [Enterobacter hormaechei]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
