Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4070377..4070586 | Replicon | chromosome |
| Accession | NZ_CP031565 | ||
| Organism | Enterobacter hormaechei strain 2013_1a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4070470..4070573 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4070377..4070586 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXA59_RS20010 | 4066914..4067576 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| AXA59_RS20015 | 4067601..4068251 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| AXA59_RS20020 | 4068363..4068593 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AXA59_RS20025 | 4068731..4069102 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| AXA59_RS20030 | 4069104..4069973 | + | 870 | WP_110870475.1 | copper homeostasis membrane protein CopD | - |
| AXA59_RS20035 | 4069990..4070328 | + | 339 | WP_110870477.1 | YebY family protein | - |
| - | 4070377..4070586 | - | 210 | - | - | Antitoxin |
| AXA59_RS20040 | 4070454..4070651 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 4070470..4070573 | + | 104 | - | - | Toxin |
| AXA59_RS20045 | 4070697..4071677 | - | 981 | WP_045345038.1 | VirK/YbjX family protein | - |
| AXA59_RS20050 | 4071845..4072489 | + | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| AXA59_RS20055 | 4072524..4072763 | - | 240 | WP_003859885.1 | YebV family protein | - |
| AXA59_RS20060 | 4072870..4074318 | - | 1449 | WP_195764999.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4005933..4077023 | 71090 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T109428 NZ_CP031565:4070470-4070573 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT109428 NZ_CP031565:c4070586-4070377 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
