Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2917290..2917561 | Replicon | chromosome |
| Accession | NZ_CP031546 | ||
| Organism | Escherichia coli strain cq9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2917328..2917431 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2917290..2917561 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DS732_RS14950 | 2914447..2915886 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DS732_RS14955 | 2916004..2916240 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DS732_RS14960 | 2916345..2916536 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DS732_RS14965 | 2916537..2917193 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2917290..2917561 | + | 272 | - | - | Antitoxin |
| - | 2917328..2917431 | - | 104 | - | - | Toxin |
| DS732_RS14970 | 2917589..2917930 | - | 342 | WP_000976492.1 | YebY family protein | - |
| DS732_RS14975 | 2917943..2918815 | - | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| DS732_RS14980 | 2918819..2919193 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| DS732_RS14985 | 2919332..2919562 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DS732_RS14990 | 2919664..2920320 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DS732_RS14995 | 2920344..2921006 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T109354 NZ_CP031546:c2917431-2917328 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT109354 NZ_CP031546:2917290-2917561 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
