Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2098413..2098494 | Replicon | chromosome |
| Accession | NZ_CP031515 | ||
| Organism | Dickeya zeae strain EC2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2098414..2098494 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2098413..2098494 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DWV07_RS09240 | 2093813..2094457 | - | 645 | WP_016941269.1 | amino acid ABC transporter permease | - |
| DWV07_RS09245 | 2094454..2095194 | - | 741 | WP_168365618.1 | amino acid ABC transporter permease | - |
| DWV07_RS09250 | 2095243..2096079 | - | 837 | WP_016941271.1 | transporter substrate-binding domain-containing protein | - |
| DWV07_RS09255 | 2096218..2096610 | - | 393 | WP_016941272.1 | RidA family protein | - |
| DWV07_RS09260 | 2097014..2097766 | + | 753 | WP_168365619.1 | IclR family transcriptional regulator | - |
| - | 2098413..2098494 | + | 82 | - | - | Antitoxin |
| - | 2098414..2098494 | - | 81 | - | - | Toxin |
| DWV07_RS09265 | 2098664..2099002 | - | 339 | WP_038908052.1 | YebY family protein | - |
| DWV07_RS09270 | 2099298..2099693 | + | 396 | WP_168365620.1 | hypothetical protein | - |
| DWV07_RS09275 | 2099795..2101090 | - | 1296 | WP_012884837.1 | YeaH/YhbH family protein | - |
| DWV07_RS09280 | 2101109..2103043 | - | 1935 | WP_012884836.1 | protein kinase YeaG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T109313 NZ_CP031515:c2098494-2098414 [Dickeya zeae]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 82 bp
>AT109313 NZ_CP031515:2098413-2098494 [Dickeya zeae]
TAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TT
TAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TT
