Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2387527..2387609 Replicon chromosome
Accession NZ_CP031507
Organism Dickeya fangzhongdai strain QZH3

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2387529..2387609 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2387527..2387609 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DYD83_RS10625 2383699..2385072 - 1374 WP_167389549.1 pectate lyase -
DYD83_RS10630 2385769..2386965 + 1197 WP_100849517.1 hypothetical protein -
- 2387527..2387609 + 83 - - Antitoxin
- 2387529..2387609 - 81 - - Toxin
DYD83_RS10635 2387779..2388117 - 339 WP_038918972.1 YebY family protein -
DYD83_RS10640 2388632..2389075 + 444 WP_100849518.1 hypothetical protein -
DYD83_RS10645 2389418..2389666 + 249 WP_100849519.1 GlsB/YeaQ/YmgE family stress response membrane protein -
DYD83_RS10650 2389781..2391523 - 1743 WP_100849520.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2378986..2389666 10680


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T109296 NZ_CP031507:c2387609-2387529 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT109296 NZ_CP031507:2387527-2387609 [Dickeya fangzhongdai]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References