Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | ccdAB/CcdA(antitoxin) |
Location | 1105264..1105790 | Replicon | chromosome |
Accession | NZ_CP031507 | ||
Organism | Dickeya fangzhongdai strain QZH3 |
Toxin (Protein)
Gene name | ccdB | Uniprot ID | C6CCH1 |
Locus tag | DYD83_RS05085 | Protein ID | WP_015854715.1 |
Coordinates | 1105264..1105569 (-) | Length | 102 a.a. |
Antitoxin (Protein)
Gene name | ccdA | Uniprot ID | - |
Locus tag | DYD83_RS05090 | Protein ID | WP_100849039.1 |
Coordinates | 1105572..1105790 (-) | Length | 73 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
DYD83_RS05075 | 1101867..1103876 | + | 2010 | WP_188726081.1 | ATP-dependent helicase | - |
DYD83_RS05080 | 1103878..1105137 | + | 1260 | WP_100849038.1 | GIY-YIG nuclease family protein | - |
DYD83_RS05085 | 1105264..1105569 | - | 306 | WP_015854715.1 | type II toxin-antitoxin system toxin CcdB | Toxin |
DYD83_RS05090 | 1105572..1105790 | - | 219 | WP_100849039.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin |
DYD83_RS05095 | 1105849..1106592 | - | 744 | WP_100849040.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
DYD83_RS05100 | 1107494..1107844 | - | 351 | WP_100849042.1 | hypothetical protein | - |
DYD83_RS05105 | 1107967..1108155 | + | 189 | WP_033111580.1 | hypothetical protein | - |
DYD83_RS05110 | 1108308..1109570 | - | 1263 | WP_100849043.1 | integrase arm-type DNA-binding domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integrative and Conjugative Element | - | - | 1091376..1109747 | 18371 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 a.a. Molecular weight: 11676.54 Da Isoelectric Point: 4.8616
>T109292 WP_015854715.1 NZ_CP031507:c1105569-1105264 [Dickeya fangzhongdai]
MQFIVYEYKRASHYKMFVDVQSDIVETPKRRMAIPLIESHHLSEKVNKTLFPLIRIDGEDYRLMTTELSSVPVEVIGEVI
ADLGGYADEIKDAINLMFWGI
MQFIVYEYKRASHYKMFVDVQSDIVETPKRRMAIPLIESHHLSEKVNKTLFPLIRIDGEDYRLMTTELSSVPVEVIGEVI
ADLGGYADEIKDAINLMFWGI
Download Length: 306 bp
>T109292 NZ_CP031507:c1105569-1105264 [Dickeya fangzhongdai]
ATGCAATTCATTGTTTATGAATACAAACGCGCCAGTCATTACAAAATGTTTGTCGATGTGCAAAGTGATATTGTCGAGAC
TCCCAAGCGGCGTATGGCTATCCCGCTTATCGAATCGCACCACCTGTCTGAGAAAGTGAATAAAACGCTGTTCCCGCTGA
TTCGCATCGATGGGGAAGATTATCGGCTGATGACCACTGAGCTATCGAGCGTTCCTGTTGAGGTCATTGGTGAAGTTATC
GCGGATCTTGGCGGCTACGCAGATGAGATCAAGGATGCTATTAATCTTATGTTTTGGGGGATATGA
ATGCAATTCATTGTTTATGAATACAAACGCGCCAGTCATTACAAAATGTTTGTCGATGTGCAAAGTGATATTGTCGAGAC
TCCCAAGCGGCGTATGGCTATCCCGCTTATCGAATCGCACCACCTGTCTGAGAAAGTGAATAAAACGCTGTTCCCGCTGA
TTCGCATCGATGGGGAAGATTATCGGCTGATGACCACTGAGCTATCGAGCGTTCCTGTTGAGGTCATTGGTGAAGTTATC
GCGGATCTTGGCGGCTACGCAGATGAGATCAAGGATGCTATTAATCTTATGTTTTGGGGGATATGA
Antitoxin
Download Length: 73 a.a. Molecular weight: 8137.12 Da Isoelectric Point: 8.6801
>AT109292 WP_100849039.1 NZ_CP031507:c1105790-1105572 [Dickeya fangzhongdai]
MKHRVSVTVDKDNYQVLSAAGVNISGLVNDAIGKEARRIKAEAWRKENREGMEEVARLIAQHGSFADENRNW
MKHRVSVTVDKDNYQVLSAAGVNISGLVNDAIGKEARRIKAEAWRKENREGMEEVARLIAQHGSFADENRNW
Download Length: 219 bp
>AT109292 NZ_CP031507:c1105790-1105572 [Dickeya fangzhongdai]
ATGAAACACCGCGTCAGCGTTACCGTGGACAAAGACAATTATCAGGTTCTGAGTGCTGCCGGAGTCAATATTTCCGGGCT
GGTGAATGATGCCATTGGCAAAGAAGCCCGCCGCATCAAAGCTGAAGCGTGGAGAAAGGAAAACCGCGAAGGGATGGAGG
AAGTCGCCCGACTCATCGCACAGCATGGCTCCTTTGCGGATGAAAACAGGAACTGGTGA
ATGAAACACCGCGTCAGCGTTACCGTGGACAAAGACAATTATCAGGTTCTGAGTGCTGCCGGAGTCAATATTTCCGGGCT
GGTGAATGATGCCATTGGCAAAGAAGCCCGCCGCATCAAAGCTGAAGCGTGGAGAAAGGAAAACCGCGAAGGGATGGAGG
AAGTCGCCCGACTCATCGCACAGCATGGCTCCTTTGCGGATGAAAACAGGAACTGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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