Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2387529..2387611 Replicon chromosome
Accession NZ_CP031505
Organism Dickeya fangzhongdai strain LN1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2387531..2387611 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2387529..2387611 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DYD82_RS10625 2383701..2385074 - 1374 WP_167389549.1 pectate lyase -
DYD82_RS10630 2385771..2386967 + 1197 WP_100849517.1 hypothetical protein -
- 2387529..2387611 + 83 - - Antitoxin
- 2387531..2387611 - 81 - - Toxin
DYD82_RS10635 2387781..2388119 - 339 WP_038918972.1 YebY family protein -
DYD82_RS10640 2388634..2389077 + 444 WP_100849518.1 hypothetical protein -
DYD82_RS10645 2389420..2389668 + 249 WP_100849519.1 GlsB/YeaQ/YmgE family stress response membrane protein -
DYD82_RS10650 2389783..2391525 - 1743 WP_100849520.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T109279 NZ_CP031505:c2387611-2387531 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT109279 NZ_CP031505:2387529-2387611 [Dickeya fangzhongdai]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References