Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PP_4151-4152/excise(antitoxin) |
Location | 422414..423249 | Replicon | chromosome |
Accession | NZ_CP031505 | ||
Organism | Dickeya fangzhongdai strain LN1 |
Toxin (Protein)
Gene name | PP_4152 | Uniprot ID | - |
Locus tag | DYD82_RS01970 | Protein ID | WP_100848750.1 |
Coordinates | 422875..423249 (+) | Length | 125 a.a. |
Antitoxin (Protein)
Gene name | PP_4151 | Uniprot ID | - |
Locus tag | DYD82_RS01965 | Protein ID | WP_100848749.1 |
Coordinates | 422414..422875 (+) | Length | 154 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
DYD82_RS01955 | 418260..418553 | + | 294 | WP_012883104.1 | type I-E CRISPR-associated endoribonuclease Cas2 | - |
DYD82_RS01960 | 420190..421866 | - | 1677 | WP_100848748.1 | MCP four helix bundle domain-containing protein | - |
DYD82_RS01965 | 422414..422875 | + | 462 | WP_100848749.1 | helix-turn-helix domain-containing protein | Antitoxin |
DYD82_RS01970 | 422875..423249 | + | 375 | WP_100848750.1 | toxin PIN | Toxin |
DYD82_RS01975 | 423473..423925 | + | 453 | WP_038917619.1 | YhbP family protein | - |
DYD82_RS01980 | 424037..424501 | - | 465 | WP_100848751.1 | anaerobic ribonucleoside-triphosphate reductase-activating protein | - |
DYD82_RS01985 | 424600..426738 | - | 2139 | WP_100848752.1 | anaerobic ribonucleoside-triphosphate reductase | - |
DYD82_RS01990 | 427118..428026 | + | 909 | WP_100848753.1 | homocysteine S-methyltransferase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13806.82 Da Isoelectric Point: 4.6730
>T109271 WP_100848750.1 NZ_CP031505:422875-423249 [Dickeya fangzhongdai]
MNQAIPDAMITGFEALIPGITLPDPDDQHVVAAAIRSNAEIIVTFNLKDFPHPEIDNFGIEALHPDDFITDLLDLNQALV
LSAVSRQRHSMRKPPKSVDEYLDALLRQSLPQTVKELSKFHALI
MNQAIPDAMITGFEALIPGITLPDPDDQHVVAAAIRSNAEIIVTFNLKDFPHPEIDNFGIEALHPDDFITDLLDLNQALV
LSAVSRQRHSMRKPPKSVDEYLDALLRQSLPQTVKELSKFHALI
Download Length: 375 bp
>T109271 NZ_CP031505:422875-423249 [Dickeya fangzhongdai]
ATGAATCAGGCTATTCCTGATGCGATGATTACTGGGTTTGAAGCGCTCATTCCAGGCATCACGCTCCCTGATCCTGATGA
TCAGCATGTGGTTGCAGCCGCCATTCGCAGTAACGCTGAAATCATCGTTACGTTTAACCTGAAAGATTTTCCCCATCCCG
AGATCGATAACTTTGGCATTGAAGCGCTACACCCGGATGATTTCATCACAGACCTGCTCGATTTGAATCAGGCGCTTGTG
TTATCCGCAGTAAGCAGGCAGCGTCACAGCATGAGAAAACCGCCTAAATCGGTTGATGAGTATCTTGATGCGTTACTCCG
GCAGAGCTTACCGCAAACAGTAAAAGAATTGAGTAAATTCCACGCCCTGATTTAG
ATGAATCAGGCTATTCCTGATGCGATGATTACTGGGTTTGAAGCGCTCATTCCAGGCATCACGCTCCCTGATCCTGATGA
TCAGCATGTGGTTGCAGCCGCCATTCGCAGTAACGCTGAAATCATCGTTACGTTTAACCTGAAAGATTTTCCCCATCCCG
AGATCGATAACTTTGGCATTGAAGCGCTACACCCGGATGATTTCATCACAGACCTGCTCGATTTGAATCAGGCGCTTGTG
TTATCCGCAGTAAGCAGGCAGCGTCACAGCATGAGAAAACCGCCTAAATCGGTTGATGAGTATCTTGATGCGTTACTCCG
GCAGAGCTTACCGCAAACAGTAAAAGAATTGAGTAAATTCCACGCCCTGATTTAG
Antitoxin
Download Length: 154 a.a. Molecular weight: 16883.25 Da Isoelectric Point: 6.2221
>AT109271 WP_100848749.1 NZ_CP031505:422414-422875 [Dickeya fangzhongdai]
MTNSILDSLSLPAPGEIEAAVRGQRELAAYLSTKMETQKISIQDADNNTRQVELPTSALTLLMSILGELAVGNAVQVVPV
HAELTTQEAANILNVSRPHMVKLLEDGKLPFHKTGRHRRVLFADLMDYKHQRDNESSRAMQALADHGQELGLY
MTNSILDSLSLPAPGEIEAAVRGQRELAAYLSTKMETQKISIQDADNNTRQVELPTSALTLLMSILGELAVGNAVQVVPV
HAELTTQEAANILNVSRPHMVKLLEDGKLPFHKTGRHRRVLFADLMDYKHQRDNESSRAMQALADHGQELGLY
Download Length: 462 bp
>AT109271 NZ_CP031505:422414-422875 [Dickeya fangzhongdai]
ATGACAAACTCAATTCTTGATAGCCTGAGCCTTCCGGCACCGGGGGAGATTGAGGCGGCTGTTCGTGGACAAAGGGAGCT
TGCTGCCTATCTCTCCACAAAGATGGAAACACAAAAAATCTCGATTCAGGATGCAGATAACAACACTCGTCAGGTCGAAT
TACCGACGTCGGCACTGACATTATTGATGTCGATTTTAGGCGAGCTGGCTGTGGGTAACGCGGTTCAGGTTGTTCCTGTT
CATGCTGAATTAACGACACAGGAGGCAGCCAACATTCTGAATGTTTCACGCCCTCACATGGTGAAGCTTCTGGAGGATGG
GAAACTACCTTTTCATAAAACCGGTCGCCACCGCCGTGTGCTTTTCGCTGACCTGATGGACTATAAACACCAGAGGGATA
ATGAAAGCAGTAGAGCAATGCAGGCGTTGGCAGATCATGGCCAAGAGCTTGGATTGTACTGA
ATGACAAACTCAATTCTTGATAGCCTGAGCCTTCCGGCACCGGGGGAGATTGAGGCGGCTGTTCGTGGACAAAGGGAGCT
TGCTGCCTATCTCTCCACAAAGATGGAAACACAAAAAATCTCGATTCAGGATGCAGATAACAACACTCGTCAGGTCGAAT
TACCGACGTCGGCACTGACATTATTGATGTCGATTTTAGGCGAGCTGGCTGTGGGTAACGCGGTTCAGGTTGTTCCTGTT
CATGCTGAATTAACGACACAGGAGGCAGCCAACATTCTGAATGTTTCACGCCCTCACATGGTGAAGCTTCTGGAGGATGG
GAAACTACCTTTTCATAAAACCGGTCGCCACCGCCGTGTGCTTTTCGCTGACCTGATGGACTATAAACACCAGAGGGATA
ATGAAAGCAGTAGAGCAATGCAGGCGTTGGCAGATCATGGCCAAGAGCTTGGATTGTACTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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