Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | EcnAB/- |
Location | 4271134..4271484 | Replicon | chromosome |
Accession | NZ_CP031458 | ||
Organism | Xanthomonas oryzae pv. oryzae strain JL28 |
Toxin (Protein)
Gene name | EcnB | Uniprot ID | G7TLC7 |
Locus tag | BRM78_RS21130 | Protein ID | WP_011257368.1 |
Coordinates | 4271134..4271268 (-) | Length | 45 a.a. |
Antitoxin (Protein)
Gene name | EcnA | Uniprot ID | G7TLC8 |
Locus tag | BRM78_RS21135 | Protein ID | WP_011407410.1 |
Coordinates | 4271332..4271484 (-) | Length | 51 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BRM78_RS21115 | 4268148..4269170 | - | 1023 | WP_011257371.1 | MBL fold metallo-hydrolase | - |
BRM78_RS21120 | 4269223..4270512 | - | 1290 | WP_011257370.1 | tryptophan--tRNA ligase | - |
BRM78_RS21125 | 4270681..4270890 | - | 210 | WP_011407411.1 | CsbD family protein | - |
BRM78_RS21130 | 4271134..4271268 | - | 135 | WP_011257368.1 | entericidin A/B family lipoprotein | Toxin |
BRM78_RS21135 | 4271332..4271484 | - | 153 | WP_011407410.1 | entericidin A/B family lipoprotein | Antitoxin |
BRM78_RS21140 | 4271592..4272515 | - | 924 | WP_011407409.1 | arginase | - |
BRM78_RS21145 | 4272837..4273511 | + | 675 | WP_011257366.1 | hypothetical protein | - |
BRM78_RS21150 | 4273508..4273747 | + | 240 | WP_011257365.1 | hypothetical protein | - |
BRM78_RS21155 | 4273754..4274050 | + | 297 | WP_011257364.1 | hypothetical protein | - |
BRM78_RS21165 | 4274530..4275213 | + | 684 | WP_011257363.1 | dTMP kinase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 45 a.a. Molecular weight: 4457.33 Da Isoelectric Point: 10.2040
>T109232 WP_011257368.1 NZ_CP031458:c4271268-4271134 [Xanthomonas oryzae pv. oryzae]
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK
Download Length: 135 bp
>T109232 NZ_CP031458:c4271268-4271134 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGTGCAATTGTGCTGCTCGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA
ATGAAGCGTGCAATTGTGCTGCTCGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA
Antitoxin
Download Length: 51 a.a. Molecular weight: 5046.99 Da Isoelectric Point: 8.7942
>AT109232 WP_011407410.1 NZ_CP031458:c4271484-4271332 [Xanthomonas oryzae pv. oryzae]
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC
Download Length: 153 bp
>AT109232 NZ_CP031458:c4271484-4271332 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0C5UG40 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0C5V759 |